Browse Element(s) Details


OsAffx.28361.1.S1_at

Description tigr:9635.m00905
TID=OsAffx.28361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0943011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein
LOC_Os07g09410OsAffx.10222.1.S1_x_at2/117+4963554..4965589hypothetical protein
LOC_Os07g09420Os.10872.1.S1_at11/117+4967673..4969425ATPase, AAA family protein, expressed
LOC_Os07g09430OsAffx.28361.1.S1_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09430OsAffx.28361.1.S1_x_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09450Os.49080.1.S1_at10/117+4976267..4979956DNAJ protein, putative, expressed
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28361.1.S1_at--938--9131Chr07:4974069..4974093 (25 bp)
TGCGGCTGCAGGATCGGGTGGCCAT
LOC_Os07g09430
OsAffx.28361.1.S1_at--35--4691Chr07:4974095..4974119 (25 bp)
GCGGAGTTCTGCTGGATCGTCCTCG
LOC_Os07g09430
OsAffx.28361.1.S1_at--416--1211Chr07:4974099..4974123 (25 bp)
AGTTCTGCTGGATCGTCCTCGGGTT
LOC_Os07g09430
OsAffx.28361.1.S1_at--885--491Chr07:4974110..4974134 (25 bp)
ATCGTCCTCGGGTTCTTCCGCTGCA
LOC_Os07g09430
OsAffx.28361.1.S1_at--117--7751Chr07:4974232..4974256 (25 bp)
GGTGTCGCTTCTCAACGCCGCCATG
LOC_Os07g09430
OsAffx.28361.1.S1_at--318--4431Chr07:4974251..4974275 (25 bp)
GCCATGGGCGTCTTGCTCATGTACA
LOC_Os07g09430
OsAffx.28361.1.S1_at--1103--791Chr07:4974254..4974278 (25 bp)
ATGGGCGTCTTGCTCATGTACAGGT
LOC_Os07g09430
OsAffx.28361.1.S1_at--387--4651Chr07:4974258..4974282 (25 bp)
GCGTCTTGCTCATGTACAGGTTGTA
LOC_Os07g09430
OsAffx.28361.1.S1_at--907--751Chr07:4974269..4974293 (25 bp)
ATGTACAGGTTGTACCTTGTCCTGC
LOC_Os07g09430
OsAffx.28361.1.S1_at--816--8751Chr07:4974279..4974303 (25 bp)
TGTACCTTGTCCTGCGCTTCGAGTA
LOC_Os07g09430
OsAffx.28361.1.S1_at--155--3831Chr07:4974290..4974314 (25 bp)
CTGCGCTTCGAGTACTTCGAGGAGA
LOC_Os07g09430
Target Sequence 
TGCGGCTGCAGGATCGGGTGGCCATGGCGGAGTTCTGCTGGATCGTCCTCGGGTTCTTCCGCTGCACAGCCGAGGGCGCG
CTCGTGAGGGTGGTGGCCGTCTTCTACGTGGTGGTGCTGCTGCCGATGCTGTGCCTCGAGGTGTTCCCGCGGGCGCCGCC
GCCGGTGTCGCTTCTCAACGCCGCCATGGGCGTCTTGCTCATGTACAGGTTGTACCTTGTCCTGCGCTTCGAGTACTTCG
AGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis