Browse Element(s) Details


OsAffx.28387.1.S1_s_at

Description tigr:9635.m01009
TID=OsAffx.28387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1042011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28387.1.S1_s_at--774--1511Chr07:5597790..5597814 (25 bp)
AGCAGCACAAGATCCAGCTTCAGCT
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--976--4891Chr07:5597806..5597830 (25 bp)
GCTTCAGCTCTATGGCGATGACAAG
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--383--1011Chr07:5598613..5598637 (25 bp)
AGGTTGTGCAGCAGACATCAAGGCT
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--1143--2931Chr07:5598632..5598656 (25 bp)
AAGGCTGAACCAGGCAATGTCATCT
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--94--2411Chr07:5598686..5598710 (25 bp)
AAACATATCGTTTGGTGGCTACTAT
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--140--7531Chr07:5598700..5598724 (25 bp)
GTGGCTACTATGAGGGCTTTTGATC
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--576--171Chr07:5598795..5598819 (25 bp)
ATTTGATATGGCACCCTACTCCCTA
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--175--3731Chr07:5598810..5598834 (25 bp)
CTACTCCCTAGTGGCCTTCATATAT
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--1108--10131Chr07:5598832..5598856 (25 bp)
TATGCTGCAATCACCTTAGCTATGT
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--279--10011Chr07:5598848..5598872 (25 bp)
TAGCTATGTGTTTACTACGTGTACA
LOC_Os07g10420
OsAffx.28387.1.S1_s_at--962--10831Chr07:5598887..5598911 (25 bp)
TTGGGTTCTTAGACCTTAGCACATA
LOC_Os07g10420
Target Sequence 
AGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAAC
CAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTG
ATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGAT
ATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTA
AATAATTGGGTTCTTAGACCTTAGCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28387.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis