Browse Element(s) Details


OsAffx.28403.1.S1_at

Description tigr:9635.m01136
TID=OsAffx.28403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1162011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11580NANA7+6386431..6387060retrotransposon protein, putative, unclassified
LOC_Os07g11590OsAffx.22848.4.S1_at2/117+6389103..6393821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11590OsAffx.22848.4.S1_x_at1/117+6389103..6393821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11600NANA7+6400154..6403451retrotransposon protein, putative, unclassified
LOC_Os07g11610NANA7+6404096..6410245transposon protein, putative, unclassified
LOC_Os07g11620OsAffx.28403.1.S1_at11/117+6411376..6412380hypothetical protein
LOC_Os07g11630Os.6445.1.S1_x_at11/117+6414328..6415011Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11640Os.8606.1.S1_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11640OsAffx.22947.1.S1_x_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11650Os.8005.2.S1_x_at11/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.8005.3.S1_x_at10/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.6445.1.S1_x_at1/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11659OsAffx.10222.1.S1_x_at9/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_x_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.10222.1.S1_at8/117+6437346..6438294NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28403.1.S1_at--333--5391Chr07:6411928..6411952 (25 bp)
GAAGCTTTGGAAGTTCAACTGCCCA
LOC_Os07g11620
OsAffx.28403.1.S1_at--800--8131Chr07:6411873..6411897 (25 bp)
GGACATGATTCTATTGCCCTGCGCA
LOC_Os07g11620
OsAffx.28403.1.S1_at--306--9171Chr07:6411859..6411883 (25 bp)
TGCCCTGCGCATGACACTGAAGAGA
LOC_Os07g11620
OsAffx.28403.1.S1_at--449--6491Chr07:6411819..6411843 (25 bp)
GATACCAAGTGTGTTGCCTGCAACA
LOC_Os07g11620
OsAffx.28403.1.S1_at--1003--6251Chr07:6411783..6411807 (25 bp)
GATGGTGGCCACCTATTTTTCAAGT
LOC_Os07g11620
OsAffx.28403.1.S1_at--1041--10251Chr07:6411694..6411718 (25 bp)
TTTGCATTCTGCTAGGGCGATTGTG
LOC_Os07g11620
OsAffx.28403.1.S1_at--663--31Chr07:6411675..6411699 (25 bp)
ATTGTGGAAGCGCTCTCTGCACTGG
LOC_Os07g11620
OsAffx.28403.1.S1_at--268--2451Chr07:6411640..6411664 (25 bp)
AAAATTAACGGCCTCATTGCTGCTG
LOC_Os07g11620
OsAffx.28403.1.S1_at--1104--3591Chr07:6411626..6411650 (25 bp)
CATTGCTGCTGTATACTTGGTGGAA
LOC_Os07g11620
OsAffx.28403.1.S1_at--856--931Chr07:6411563..6411587 (25 bp)
AGGCACATCTGCTGGCGGTTGTCAA
LOC_Os07g11620
OsAffx.28403.1.S1_at--858--3231Chr07:6411524..6411548 (25 bp)
CAAGCCACTGGGAGAGACCGACGTT
LOC_Os07g11620
Target Sequence 
GAAGCTTTGGAAGTTCAACTGCCCAAATAAAATTAAACACTTTTTGTGGCGGTTGGGACATGATTCTATTGCCCTGCGCA
TGACACTGAAGAGAAGAGGGTTGGACCTGGATACCAAGTGTGTTGCCTGCAACAGGCTTGATGAAGATGGTGGCCACCTA
TTTTTCAAGTGCAAGGAAGTGAAGAAAATTTGGAGGGAGTTAAATCTGGAAGATTTAACATGCGAGTTAGCCAATTTGCA
TTCTGCTAGGGCGATTGTGGAAGCGCTCTCTGCACTGGGGGAGAATGAAAAATTAACGGCCTCATTGCTGCTGTATACTT
GGTGGAATGAGAGAAATAGGAGAAGGGAGGGGGATGGAAGAAGAGAGGCACATCTGCTGGCGGTTGTCAAGCAGGCTAGA
AGACCAAGCCACTGGGAGAGACCGACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis