Browse Element(s) Details


OsAffx.28405.1.S1_at

Description gb:NM_186568.1
DB_XREF= gi:34900221
GEN=OSJNBa0031C24.17
TID=OsAffx.28405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0031C24.17 (OSJNBa0031C24.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1179011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11739Os.38113.2.S1_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11739Os.38113.2.S1_a_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11760NANA7+6501701..6503652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11770Os.38113.1.S2_at10/117+6503949..6505389expressed protein
LOC_Os07g11780Os.26886.3.S1_x_at1/117+6509780..6510901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11790OsAffx.28405.1.S1_at11/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os07g11790OsAffx.28405.2.S1_x_at9/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os07g11800NANA7+6526592..6531013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11810Os.45173.1.S1_x_at6/117+6531279..6533411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11820NANA7+6539289..6540245transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11830NANA7+6543226..6546077transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28405.1.S1_at--983--231Chr07:6516399..6516640 (25 bp)
ATATCTTCAAATACTATCGAGCAAT
LOC_Os07g11790
OsAffx.28405.1.S1_at--34--2271Chr07:6516391..6516415 (25 bp)
AAATACTATCGAGCAATTTCCTCCA
LOC_Os07g11790
OsAffx.28405.1.S1_at--676--2031Chr07:6516387..6516411 (25 bp)
ACTATCGAGCAATTTCCTCCAAGAA
LOC_Os07g11790
OsAffx.28405.1.S1_at--759--3811Chr07:6516371..6516395 (25 bp)
CTCCAAGAAGCAGAATGGTTTCATC
LOC_Os07g11790
OsAffx.28405.1.S1_at--356--3231Chr07:6516368..6516392 (25 bp)
CAAGAAGCAGAATGGTTTCATCAAA
LOC_Os07g11790
OsAffx.28405.1.S1_at--591--7871Chr07:6516355..6516379 (25 bp)
GGTTTCATCAAAACTATATTCCATG
LOC_Os07g11790
OsAffx.28405.1.S1_at--18--2431Chr07:6516346..6516370 (25 bp)
AAAACTATATTCCATGCTTTACTGA
LOC_Os07g11790
OsAffx.28405.1.S1_at--669--4331Chr07:6516335..6516359 (25 bp)
CCATGCTTTACTGATCATGTGACTG
LOC_Os07g11790
OsAffx.28405.1.S1_at--627--6431Chr07:6516323..6516347 (25 bp)
GATCATGTGACTGTTTCCCTCCAGA
LOC_Os07g11790
OsAffx.28405.1.S1_at--757--7371Chr07:6516317..6516341 (25 bp)
GTGACTGTTTCCCTCCAGACCGGAG
LOC_Os07g11790
OsAffx.28405.1.S1_at--131--6831Chr07:6516311..6516335 (25 bp)
GTTTCCCTCCAGACCGGAGGTGCAA
LOC_Os07g11790
Target Sequence 
ATATCTTCAAATACTATCGAGCAATTTCCTCCAAGAAGCAGAATGGTTTCATCAAAACTATATTCCATGCTTTACTGATC
ATGTGACTGTTTCCCTCCAGACCGGAGGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis