Browse Element(s) Details


OsAffx.28408.1.S1_at

Description tigr:9635.m01189
TID=OsAffx.28408.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1213011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12100Os.31338.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12100OsAffx.10212.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12110Os.6714.1.S1_a_at11/117+6761788..6765633Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g12120OsAffx.16222.1.S1_at11/117+6775171..6776190hypothetical protein
LOC_Os07g12130OsAffx.28408.1.S1_at11/117+6777673..6779818Myb-like DNA-binding domain containing protein
LOC_Os07g12140Os.32977.1.S1_x_at11/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12140OsAffx.32241.1.A1_at2/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12150Os.14385.1.S1_at11/117+6797286..6798153Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os07g12160Os.40210.1.S1_at10/117+6801713..68048772-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28408.1.S1_at--675--7391Chr07:6778179..6778203 (25 bp)
GTGATAGGTGCAAGTCCAACTCTAC
LOC_Os07g12130
OsAffx.28408.1.S1_at--115--2511Chr07:6778162..6778186 (25 bp)
AACTCTACCCGTTGTGCAGGAGCCA
LOC_Os07g12130
OsAffx.28408.1.S1_at--795--2991Chr07:6778111..6778135 (25 bp)
AATGTTCCTTGATCTACTCAACCAG
LOC_Os07g12130
OsAffx.28408.1.S1_at--642--5671Chr07:6778053..6778077 (25 bp)
GACTTGTTCAACATGACACCGGAGG
LOC_Os07g12130
OsAffx.28408.1.S1_at--768--1011Chr07:6778031..6778055 (25 bp)
AGGTATCACACCTCAACACTAGTGG
LOC_Os07g12130
OsAffx.28408.1.S1_at--1035--311Chr07:6778006..6778030 (25 bp)
ATACTGTCTACAGCTCGATGCAGGG
LOC_Os07g12130
OsAffx.28408.1.S1_at--1147--2611Chr07:6777978..6778002 (25 bp)
AACCTGTATTATGGCCGGCTACCAG
LOC_Os07g12130
OsAffx.28408.1.S1_at--541--6431Chr07:6777928..6777952 (25 bp)
GATCAGTACCCAGGAGCTGCAGGAT
LOC_Os07g12130
OsAffx.28408.1.S1_at--158--1011Chr07:6777908..6777932 (25 bp)
AGGATACTCCGCAACTAAGCCTGTA
LOC_Os07g12130
OsAffx.28408.1.S1_at--656--8011Chr07:6777838..6777862 (25 bp)
GGAGTTCAATCACCAGTTGTCCAAC
LOC_Os07g12130
OsAffx.28408.1.S1_at--13--7271Chr07:6777726..6777750 (25 bp)
GTCCAAATGGCGTCCAACCAGTTTA
LOC_Os07g12130
Target Sequence 
GTGATAGGTGCAAGTCCAACTCTACCCGTTGTGCAGGAGCCAGGCACCTCCACACCACCAGGATTGGTAATGTTCCTTGA
TCTACTCAACCAGGCCATACCGCACCCACCGCAGCCAGAGACCATGGACTTGTTCAACATGACACCGGAGGTATCACACC
TCAACACTAGTGGATACTGTCTACAGCTCGATGCAGGGGGCAACCTGTATTATGGCCGGCTACCAGCACCAGCACCGGTG
CAGCCACATGGGATCAGTACCCAGGAGCTGCAGGATACTCCGCAACTAAGCCTGTACTACCCGCTGTCGTCATTTGCCGG
GAGCCACACGGATGGCACTGTGGAGTTCAATCACCAGTTGTCCAACCCGAACGGCGGCCACTATGGCGAGGAGGCAGGCC
CAAGTAGCGTCGCCACTGGTGGCAGCGCCAATGGCATGGATGACAATGACGTCGTCCAAATGGCGTCCAACCAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis