Browse Element(s) Details


OsAffx.28418.2.S1_x_at

Description tigr:9632.m01040
TID=OsAffx.28418.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g484401/11expressed protein
LOC_Os10g232041/11Protein CutA, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein
LOC_Os03g48430OsAffx.3552.1.S1_at11/113+27530189..27531310oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g48440OsAffx.30514.1.S1_at10/113+27533058..27536297expressed protein
LOC_Os03g48440Os.56258.1.S1_at2/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28418.2.S1_x_at1/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28551.1.S1_at1/113+27533058..27536297expressed protein
LOC_Os03g48450Os.26916.1.S2_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S2_s_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S1_a_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.2.S1_at2/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48457NANA3+27546660..27549991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.47463.1.S1_x_at5/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.14491.2.S1_x_at4/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28418.2.S1_x_at--986--31Chr04:6366094..6366118 (25 bp)
ATTGTCGCCCTCAACGGTGGCGAAG
NONE
OsAffx.28418.2.S1_x_at--808--8391Chr04:6366200..6366224 (25 bp)
GGCGCAAATTCTGGCGACAATTGGA
NONE
OsAffx.28418.2.S1_x_at--891--3291Chr04:6366204..6366228 (25 bp)
CAAATTCTGGCGACAATTGGAGCAA
NONE
OsAffx.28418.2.S1_x_at--696--3151Chr04:6366206..6366230 (25 bp)
AATTCTGGCGACAATTGGAGCAAAG
NONE
OsAffx.28418.2.S1_x_at--826--9451Chr04:6366209..6366233 (25 bp)
TCTGGCGACAATTGGAGCAAAGCCA
NONE
OsAffx.28418.2.S1_x_at--916--3173Chr10:11779497..11779518 (22 bp)
CAATTGGAGCAAAGCCAGGCGGCGT
LOC_Os10g23204
OsAffx.28418.2.S1_x_at--231--8511Chr04:6366278..6366302 (25 bp)
TGGCACTCGTGCGTCGCTATGGCGC
NONE
OsAffx.28418.2.S1_x_at--506--4871Chr04:6366293..6366317 (25 bp)
GCTATGGCGCAGATCACGCCGGGTC
NONE
OsAffx.28418.2.S1_x_at--650--871Chr04:6366296..6366320 (25 bp)
ATGGCGCAGATCACGCCGGGTCCGC
NONE
OsAffx.28418.2.S1_x_at--20--4151Chr04:6366322..6366346 (25 bp)
CGCTGGTTCGCGAAGCTCGCGGCTC
NONE
OsAffx.28418.2.S1_x_at--1113--6691Chr04:6366327..6366351 (25 bp)
GTTCGCGAAGCTCGCGGCTCGATCA
NONE
Target Sequence 
ATTGTCGCCCTCAACGGTGGCGAAGACGACGGCGACACAACACGACTTGGGTGTCCGGTTCTCAGGCGCGATTTCCAGGC
GATGCGACACGGTTTCCGCAGTTGGTGGCGCAAATTCTGGCGACAATTGGAGCAAAGCCAGGCGGCGTGCGTGCGGCTCG
AGTCGCGAGCGCGATGGGTGGGCGTGGCACTCGTGCGTCGCTATGGCGCAGATCACGCCGGGTCCGCGCGCTGGTTCGCG
AAGCTCGCGGCTCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28418.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis