Browse Element(s) Details


Os.26916.1.S2_s_at

Description gb:AK101848.1
DB_XREF= gi:32987057
TID=Os.26916.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069K04, full insert sequence.
FL= gb:AK101848.1 gb:AK101402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4845011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein
LOC_Os03g48430OsAffx.3552.1.S1_at11/113+27530189..27531310oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g48440OsAffx.30514.1.S1_at10/113+27533058..27536297expressed protein
LOC_Os03g48440Os.56258.1.S1_at2/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28418.2.S1_x_at1/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28551.1.S1_at1/113+27533058..27536297expressed protein
LOC_Os03g48450Os.26916.1.S2_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S2_s_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S1_a_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.2.S1_at2/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48457NANA3+27546660..27549991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.47463.1.S1_x_at5/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.14491.2.S1_x_at4/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48471OsAffx.30475.3.S1_s_at11/113+27561349..27563132ATP synthase alpha chain, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26916.1.S2_s_at--1031--891Chr03:27538190..27538214 (25 bp)
AGGCATGAATTAATTTGACTTGGAT
LOC_Os03g48450
Os.26916.1.S2_s_at--740--10271Chr03:27538177..27538201 (25 bp)
TTTGACTTGGATACAATGGACATAT
LOC_Os03g48450
Os.26916.1.S2_s_at--611--8131Chr03:27538160..27538184 (25 bp)
GGACATATATCAGCACATCTATGCA
LOC_Os03g48450
Os.26916.1.S2_s_at--1094--5831Chr03:27538131..27538155 (25 bp)
GACCTTCTGATCCTCATGAAGCCTT
LOC_Os03g48450
Os.26916.1.S2_s_at--1084--6351Chr03:27538123..27538147 (25 bp)
GATCCTCATGAAGCCTTGGTTTTAA
LOC_Os03g48450
Os.26916.1.S2_s_at--564--10491Chr03:27538102..27538126 (25 bp)
TTAACCGTTGCCGTACGAGTGCTTA
LOC_Os03g48450
Os.26916.1.S2_s_at--968--6671Chr03:27538096..27538120 (25 bp)
GTTGCCGTACGAGTGCTTAGTGCTT
LOC_Os03g48450
Os.26916.1.S2_s_at--285--6991Chr03:27538090..27538114 (25 bp)
GTACGAGTGCTTAGTGCTTGCCCCT
LOC_Os03g48450
Os.26916.1.S2_s_at--179--1131Chr03:27538085..27538109 (25 bp)
AGTGCTTAGTGCTTGCCCCTGTTTA
LOC_Os03g48450
Os.26916.1.S2_s_at--787--4911Chr03:27538075..27538099 (25 bp)
GCTTGCCCCTGTTTAGCCTTTTTAT
LOC_Os03g48450
Os.26916.1.S2_s_at--169--4251Chr03:27538044..27538068 (25 bp)
CCTTTTCCAGGGATGTAATTTACAG
LOC_Os03g48450
Target Sequence 
AGGCATGAATTAATTTGACTTGGATACAATGGACATATATCAGCACATCTATGCATTANGACCTTCTGATCCTCATGAAG
CCTTGGTTTTAACCGTTGCCGTACGAGTGCTTAGTGCTTGCCCCTGTTTAGCCTTTTTATANTTTCCCTTTTCCAGGGAT
GTAATTTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26916.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis