Browse Element(s) Details


Os.26916.1.S1_a_at

Description gb:AK101402.1
DB_XREF= gi:32986611
TID=Os.26916.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037F15, full insert sequence.
FL= gb:AK101848.1 gb:AK101402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4845011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein
LOC_Os03g48430OsAffx.3552.1.S1_at11/113+27530189..27531310oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g48440OsAffx.30514.1.S1_at10/113+27533058..27536297expressed protein
LOC_Os03g48440Os.56258.1.S1_at2/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28418.2.S1_x_at1/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28551.1.S1_at1/113+27533058..27536297expressed protein
LOC_Os03g48450Os.26916.1.S2_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S2_s_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S1_a_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.2.S1_at2/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48457NANA3+27546660..27549991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.47463.1.S1_x_at5/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.14491.2.S1_x_at4/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48471OsAffx.30475.3.S1_s_at11/113+27561349..27563132ATP synthase alpha chain, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26916.1.S1_a_at--998--7931Chr03:27539266..27539290 (25 bp)
GGATTTGTCCAGTCTCCATTAAACC
LOC_Os03g48450
Os.26916.1.S1_a_at--821--4311Chr03:27539251..27539275 (25 bp)
CCATTAAACCAAGACATTGTGCTGA
LOC_Os03g48450
Os.26916.1.S1_a_at--430--5671Chr03:27539206..27539230 (25 bp)
GACATCTATCACAAAGACTTTGTCA
LOC_Os03g48450
Os.26916.1.S1_a_at--7--871Chr03:27539165..27539189 (25 bp)
ATGGCTCCTTCAAGGGTGGAAAGGA
LOC_Os03g48450
Os.26916.1.S1_a_at--1098--8191Chr03:27539143..27539167 (25 bp)
GGAAGGATAATCTATGCCATATCTA
LOC_Os03g48450
Os.26916.1.S1_a_at--767--9191Chr03:27539129..27539153 (25 bp)
TGCCATATCTACATGGAAGCCTAAT
LOC_Os03g48450
Os.26916.1.S1_a_at--1087--3131Chr03:27539101..27539125 (25 bp)
AATTAGGGTATGGTCTGTGAGCTGT
LOC_Os03g48450
Os.26916.1.S1_a_at--585--7371Chr03:27539085..27539109 (25 bp)
GTGAGCTGTGCCTGGTTGCCCGTTA
LOC_Os03g48450
Os.26916.1.S1_a_at--575--7911Chr03:27539072..27539096 (25 bp)
GGTTGCCCGTTAGCACTAGCAATTA
LOC_Os03g48450
Os.26916.1.S1_a_at--1120--5511Chr03:27539042..27539066 (25 bp)
GAAAAGTACCTTGCATTGGGCTACA
LOC_Os03g48450
Os.26916.1.S1_a_at--1097--4931Chr03:27539030..27539054 (25 bp)
GCATTGGGCTACATGCGTATGTACA
LOC_Os03g48450
Target Sequence 
GGATTTGTCCAGTCTCCATTAAACCAAGACATTGTGCTGANAGCCAAGGACAAAGTGAAAGACATCTATCACAAAGACTT
TGTCATTGATGAAGACAGTGNATGGCTCCTTCAAGGGTGGAAAGGAAGGATAATCTATGCCATATCTACATGGAAGCCTA
ATAACAATTAGGGTATGGTCTGTGAGCTGTGCCTGGTTGCCCGTTAGCACTAGCAATTAACGAAGAAAAGTACCTTGCAT
TGGGCTACATGCGTATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26916.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis