Browse Element(s) Details


OsAffx.3552.1.S1_at

Description tigr:9631.m04713
TID=OsAffx.3552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable dioxygenase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4843011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48400OsAffx.13404.1.S1_at11/113+27504978..27506238hypothetical protein
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein
LOC_Os03g48430OsAffx.3552.1.S1_at11/113+27530189..27531310oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g48440OsAffx.30514.1.S1_at10/113+27533058..27536297expressed protein
LOC_Os03g48440Os.56258.1.S1_at2/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28418.2.S1_x_at1/113+27533058..27536297expressed protein
LOC_Os03g48440OsAffx.28551.1.S1_at1/113+27533058..27536297expressed protein
LOC_Os03g48450Os.26916.1.S2_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S2_s_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.1.S1_a_at11/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48450Os.26916.2.S1_at2/113+27537804..27541959GRAS family transcription factor containing protein, expressed
LOC_Os03g48457NANA3+27546660..27549991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.47463.1.S1_x_at5/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48464Os.14491.2.S1_x_at4/113+27552675..27556372transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3552.1.S1_at--208--1951Chr03:27530661..27530685 (25 bp)
ACGGCGTCAGCGTGGTGAGCAACTA
LOC_Os03g48430
OsAffx.3552.1.S1_at--227--4651Chr03:27530658..27530682 (25 bp)
GCGTCAGCGTGGTGAGCAACTACTA
LOC_Os03g48430
OsAffx.3552.1.S1_at--856--1631Chr03:27530653..27530677 (25 bp)
AGCGTGGTGAGCAACTACTACCCGC
LOC_Os03g48430
OsAffx.3552.1.S1_at--716--1891Chr03:27530599..27530623 (25 bp)
ACGGCGAGGCACTCCGACCCGGCGT
LOC_Os03g48430
OsAffx.3552.1.S1_at--885--4031Chr03:27530577..27530601 (25 bp)
CGTTCCTGACCGTGCTCCTGCAGGA
LOC_Os03g48430
OsAffx.3552.1.S1_at--668--9251Chr03:27530574..27530598 (25 bp)
TCCTGACCGTGCTCCTGCAGGACGG
LOC_Os03g48430
OsAffx.3552.1.S1_at--842--9371Chr03:27530460..27530484 (25 bp)
TCGAGCTCGTCAGCAACGGGAGGAT
LOC_Os03g48430
OsAffx.3552.1.S1_at--710--11Chr03:27530424..27530448 (25 bp)
AGCACCGGGTGGTGGCCAACCGGAG
LOC_Os03g48430
OsAffx.3552.1.S1_at--831--4031Chr03:27530370..27530394 (25 bp)
CGTTCTGCAACGTCGACCTGGGCCG
LOC_Os03g48430
OsAffx.3552.1.S1_at--159--1371Chr03:27530343..27530367 (25 bp)
AGAGCAGCCGGAGCGGCAGGCTGTA
LOC_Os03g48430
OsAffx.3552.1.S1_at--314--9331Chr03:27530247..27530271 (25 bp)
TCGCGCACTACGACGGCAAGGGCCT
LOC_Os03g48430
Target Sequence 
ACGGCGTCAGCGTGGTGAGCAACTACTACCCGCCGTGCCCGGAGCCGGAGGCCACCGTCGGCACGGCGAGGCACTCCGAC
CCGGCGTTCCTGACCGTGCTCCTGCAGGACGGCATGGGCGGCCTCCAGGCGCTCCTCGGCGGGCGGTGGGTGGACGTCCC
GCCCGTCGCCGGCGCGCTCGTCGTCAACGTCGGTGACCTGCTCGAGCTCGTCAGCAACGGGAGGATGAGGAGCGTGGAGC
ACCGGGTGGTGGCCAACCGGAGCAGGGACGCGGCGCGGGTGTCCGTGGCGGCGTTCTGCAACGTCGACCTGGGCCGCGAG
AGCAGCCGGAGCGGCAGGCTGTACGGCCCCATCGCCGAGCTCACCGCCGGCGGCGACCCGCCGCGGTACAGGAGCACCAC
CGTCGCCGAGTTCCTCGCGCACTACGACGGCAAGGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis