Browse Element(s) Details


OsAffx.2843.1.S1_at

Description tigr:9630.m03189
TID=OsAffx.2843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3357011/11hypothetical protein
LOC_Os08g249401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33540NANA2+19936642..19942502translational activator family protein, putative, expressed
LOC_Os02g33550Os.10576.1.S1_at11/112+19948702..19949786harpin-induced family protein, putative, expressed
LOC_Os02g33560Os.49660.1.S1_at10/112+19956730..19962055expressed protein
LOC_Os02g33570OsAffx.2843.1.S1_at11/112+19965631..19966110hypothetical protein
LOC_Os02g33580Os.27821.1.S1_s_at11/112+19967319..19971585digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os02g33590Os.55653.1.S1_at8/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33590OsAffx.19551.1.S1_x_at5/112+19975666..19977308U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2843.1.S1_at--849--3251Chr02:19965663..19965687 (25 bp)
CAACGGCTTCAACGACAATGGTGGC
LOC_Os02g33570
OsAffx.2843.1.S1_at--122--9371Chr02:19965732..19965756 (25 bp)
TCGACTGCGGTTAGTGAGCAGCGCT
LOC_Os02g33570
OsAffx.2843.1.S1_at--177--5791Chr02:19965771..19965795 (25 bp)
GACGACGGCTTTGATGACAGTCAAC
LOC_Os02g33570
OsAffx.2843.1.S1_at--338--8871Chr02:19965782..19965806 (25 bp)
TGATGACAGTCAACGAGCCCGGTGG
LOC_Os02g33570
OsAffx.2843.1.S1_at--469--10511Chr02:19965876..19965900 (25 bp)
TTCAATGATGGTCGGCAAGCCCGAC
LOC_Os02g33570
OsAffx.2843.1.S1_at--965--5151Chr02:19965890..19965914 (25 bp)
GCAAGCCCGACGACAACAATTTCGA
LOC_Os02g33570
OsAffx.2843.1.S1_at--952--3151Chr02:19965906..19965930 (25 bp)
CAATTTCGACGGTGGCAGTGATAGC
LOC_Os02g33570
OsAffx.2843.1.S1_at--398--3972Chr02:19965966..19965990 (25 bp)
CGGTGACAACTTCGATGACGGTCAA
LOC_Os02g33570
OsAffx.2843.1.S1_at--245--11Chr02:19965980..19966004 (25 bp)
ATGACGGTCAAAAAGCCCGGCGGCG
LOC_Os02g33570
OsAffx.2843.1.S1_at--95--1371Chr02:19966015..19966039 (25 bp)
AGAGCTGGGAAACAACTGCGACAAT
LOC_Os02g33570
OsAffx.2843.1.S1_at--644--4834Chr02:19966054..19966078 (25 bp)
GCTAAGGGCGATTTTGTCTTTTTGA
LOC_Os02g33570
Target Sequence 
CAACGGCTTCAACGACAATGGTGGCGGCGGAGGCCACGGCTTCGACGATGGCCGACGGCAGCGGCGGGTTCGACTGCGGT
TAGTGAGCAGCGCTAGGAAGCGCGTGGCGACGACGGCTTTGATGACAGTCAACGAGCCCGGTGGCAGTGGATTCGACAGT
GGCGGTGATGGCGGAGGCAACAGCGCTGGGAAGCGGGCGGTGGCGGCGGTGGCTTCAATGATGGTCGGCAAGCCCGACGA
CAACAATTTCGACGGTGGCAGTGATAGCGGAGGCAGCAGCAAGCGGCGTTGGGAAATGGGCGGCGGTGACAACTTCGATG
ACGGTCAAAAAGCCCGGCGGCGGTTGGCGAGCAGAGCTGGGAAACAACTGCGACAATGGGGAATAGATAGGGCTAAGGGC
GATTTTGTCTTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis