Browse Element(s) Details


OsAffx.28457.1.S1_at

Description tigr:9635.m01529
TID=OsAffx.28457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15340Os.20614.3.S1_x_at11/117+8839730..8842423hAT family dimerisation domain containing protein
LOC_Os07g15350OsAffx.11949.1.S1_at11/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.47463.1.S1_x_at4/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.14491.2.S1_x_at3/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.27037.1.A1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350OsAffx.15868.1.S1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15360OsAffx.28457.1.S1_at11/117+8859988..8862602hypothetical protein
LOC_Os07g15360OsAffx.10096.1.S1_x_at2/117+8859988..8862602hypothetical protein
LOC_Os07g15370Os.9420.1.S1_at11/117+8869889..8877210Metal transporter Nramp1, putative, expressed
LOC_Os07g15380OsAffx.28458.1.S1_at11/117+8881477..8881935NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28457.1.S1_at--411--7675Chr11:874991..875013 (23 bp)
GGGTAAGGTTACATCGCCGCACGGT
NONE
OsAffx.28457.1.S1_at--957--4114Chr07:8860676..8860698 (23 bp)
CGCACGGTGGCTTACAAGAGGTAGC
LOC_Os07g15360
OsAffx.28457.1.S1_at--447--2791Chr07:8862078..8862099 (22 bp)
AAGAGGTAGCCAAAATTCTCTGGTT
LOC_Os07g15360
OsAffx.28457.1.S1_at--681--3151Chr07:8862088..8862112 (25 bp)
AATTCTCTGGTTGGCATTACTTCTC
LOC_Os07g15360
OsAffx.28457.1.S1_at--113--5471Chr07:8862125..8862149 (25 bp)
GAACTGGTTGCCCTTACTGCACACT
LOC_Os07g15360
OsAffx.28457.1.S1_at--1052--10471Chr07:8862138..8862162 (25 bp)
TTACTGCACACTTCGACACATGTGA
LOC_Os07g15360
OsAffx.28457.1.S1_at--1027--9351Chr07:8862150..8862174 (25 bp)
TCGACACATGTGAGAGCACTCTTTA
LOC_Os07g15360
OsAffx.28457.1.S1_at--826--5571Chr07:8862306..8862330 (25 bp)
GAAAGTGCAAAGCTGGCCACACGTC
LOC_Os07g15360
OsAffx.28457.1.S1_at--981--4691Chr07:8862317..8862341 (25 bp)
GCTGGCCACACGTCGGAATCACAAA
LOC_Os07g15360
OsAffx.28457.1.S1_at--161--5231Chr07:8862332..8862356 (25 bp)
GAATCACAAAAATGCCTCCTTGCCA
LOC_Os07g15360
OsAffx.28457.1.S1_at--996--10691Chr07:8862351..8862375 (25 bp)
TTGCCATCTCACACAGTGCCAAATG
LOC_Os07g15360
Target Sequence 
GGGTAAGGTTACATCGCCGCACGGTGGCTTACAAGAGGTAGCCAAAATTCTCTGGTTGGCATTACTTCTCAAGAAAAATG
GGGAACTGGTTGCCCTTACTGCACACTTCGACACATGTGAGAGCACTCTTTATAACAAAGGATGTGATGGATTGGAAAGA
ACAAAGCTGGATAAGAACATGCATGAAACTATGAAAGTGCAAAGCTGGCCACACGTCGGAATCACAAAAATGCCTCCTTG
CCATCTCACACAGTGCCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis