Browse Element(s) Details


OsAffx.28487.1.S1_at

Description tigr:9635.m01729
TID=OsAffx.28487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1721011/11chromatin assembly factor-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17180OsAffx.16306.1.S1_at11/117+10107914..10109731No apical meristem protein
LOC_Os07g17189NANA7+10118574..10119009NA
LOC_Os07g17200NANA7+10123288..10123626hypothetical protein
LOC_Os07g17210OsAffx.28487.1.S1_at11/117+10126641..10135779chromatin assembly factor-1, putative, expressed
LOC_Os07g17220Os.10506.1.S1_at11/117+10140594..10144188Leucine Rich Repeat family protein, expressed
LOC_Os07g17230OsAffx.16307.1.S1_at11/117+10153757..10158080B3 DNA binding domain containing protein, expressed
LOC_Os07g17240Os.35344.3.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240Os.35344.18.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.2.S1_s_at8/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.3.S1_x_at6/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.5.S1_x_at4/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.1.S1_s_at2/117+10160360..10166992transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0009934biological_processregulation of meristem organization
GO:0005678cellular_componentchromatin assembly complex
GO:0042393molecular_functionhistone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28487.1.S1_at--101--2951Chr07:10127698..10127722 (25 bp)
AAGGCTCTTCATAGCTTCACTGAAC
LOC_Os07g17210
OsAffx.28487.1.S1_at--90--2551Chr07:10127571..10127595 (25 bp)
AACTCTGTTTGCAAGCTCTCTGTAT
LOC_Os07g17210
OsAffx.28487.1.S1_at--228--7611Chr07:10127532..10127556 (25 bp)
GGGCACCCATCATTGATGTTCCTGT
LOC_Os07g17210
OsAffx.28487.1.S1_at--234--6671Chr07:10127515..10127539 (25 bp)
GTTCCTGTCGACATTAATTTTCCCA
LOC_Os07g17210
OsAffx.28487.1.S1_at--763--5571Chr07:10127460..10127484 (25 bp)
GAAAGGGACCTAGCACACCTGTGGC
LOC_Os07g17210
OsAffx.28487.1.S1_at--240--3131Chr07:10127426..10127450 (25 bp)
AATTTCAGGCTCTGACTTGCCAGAA
LOC_Os07g17210
OsAffx.28487.1.S1_at--92--171Chr07:10127308..10127332 (25 bp)
ATTATTTCATCATGCCCTTATGGGA
LOC_Os07g17210
OsAffx.28487.1.S1_at--1049--3111Chr07:10127253..10127277 (25 bp)
AATTTCCTTGTGTCCCTAAGTTGCA
LOC_Os07g17210
OsAffx.28487.1.S1_at--344--6491Chr07:10127207..10127231 (25 bp)
GATAGCTGACTTTACCAATAACCGT
LOC_Os07g17210
OsAffx.28487.1.S1_at--871--7851Chr07:10126718..10126742 (25 bp)
GGTATCCAACAGATGCAGCCTGATG
LOC_Os07g17210
OsAffx.28487.1.S1_at--717--51Chr07:10126692..10126716 (25 bp)
ATCGGGAGATTCAGTTCAACCCTCT
LOC_Os07g17210
Target Sequence 
AAGGCTCTTCATAGCTTCACTGAACATGCTCTTAAGAAGGACAGGCCTTTAGTCATATACAACCTAGATCATGGGAAAGC
TTACCTATTGGATGCTGAAGCTATCACTGGAATACTTAAGGTGGAGCAACTCTGTTTGCAAGCTCTCTGTATGAAGGAAT
ACCTGGGGGCACCCATCATTGATGTTCCTGTCGACATTAATTTTCCCATTAAAGATCTGGAAATTGGTCGACTGAACAGA
AAGGGACCTAGCACACCTGTGGCCTCCAAATCAATTTCAGGCTCTGACTTGCCAGAATTTGTAAAAATTATTTCATCATG
CCCTTATGGGATAGGCAAATTGGTGGAGTCATTGCGTGTGCAATTTCCTTGTGTCCCTAAGTTGCAACTGAAGAACAAAA
TTTGGGAGATAGCTGACTTTACCAATAACCGTTGGCAGGTTAAGAAAGATATCTTGGACTGGTGTGGTCTATCTCTTCCA
CCAGATAGAGGTATCCAACAGATGCAGCCTGATGAATCGGGAGATTCAGTTCAACCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis