Browse Element(s) Details


OsAffx.28509.1.S1_at

Description tigr:9635.m01862
TID=OsAffx.28509.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1846011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18400NANA7+10894941..10896326retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18410OsAffx.7216.1.S1_at2/117+10897079..10899175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18410OsAffx.16438.1.S1_at1/117+10897079..10899175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18410OsAffx.20387.1.S1_x_at1/117+10897079..10899175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18420OsAffx.29419.3.S1_at1/117+10899836..10901866retrotransposon protein, putative, unclassified
LOC_Os07g18420OsAffx.21161.1.S1_at1/117+10899836..10901866retrotransposon protein, putative, unclassified
LOC_Os07g18430NANA7+10904698..10905633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18440OsAffx.7657.1.S1_x_at1/117+10906043..10907438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18440OsAffx.7657.1.S1_at1/117+10906043..10907438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18450OsAffx.22759.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18450OsAffx.26987.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18460OsAffx.28509.1.S1_at11/117+10920767..10923262hypothetical protein
LOC_Os07g18469NANA7+10924400..10924793NA
LOC_Os07g18480OsAffx.16324.2.S1_s_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_x_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18489OsAffx.22832.2.S1_at1/117+10939766..10941659NA
LOC_Os07g18489OsAffx.22832.2.S1_x_at1/117+10939766..10941659NA
LOC_Os07g18500Os.46012.2.S1_x_at10/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.46012.3.S1_x_at6/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.27088.1.A1_x_at5/117+10943695..10948410retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28509.1.S1_at--1005--7591Chr07:10922669..10922693 (25 bp)
GGGCAGAAACACCACATCTCTAAGG
LOC_Os07g18460
OsAffx.28509.1.S1_at--1111--9771Chr07:10922689..10922713 (25 bp)
TAAGGTGTTCTTCAGATCACGTTCT
LOC_Os07g18460
OsAffx.28509.1.S1_at--246--6451Chr07:10922703..10922727 (25 bp)
GATCACGTTCTGAAGCTGCCAATAG
LOC_Os07g18460
OsAffx.28509.1.S1_at--124--5991Chr07:10922771..10922795 (25 bp)
GAGACTTTTGTGTCCGCGAAGAGCT
LOC_Os07g18460
OsAffx.28509.1.S1_at--876--2771Chr07:10922789..10922813 (25 bp)
AAGAGCTCCGAGTTGTGTTCATTCC
LOC_Os07g18460
OsAffx.28509.1.S1_at--1134--6731Chr07:10922805..10922829 (25 bp)
GTTCATTCCGTACCGATGATGACGA
LOC_Os07g18460
OsAffx.28509.1.S1_at--958--671Chr07:10922823..10922847 (25 bp)
ATGACGACTCCGAGTCACGATCGTT
LOC_Os07g18460
OsAffx.28509.1.S1_at--295--3191Chr07:10922865..10922889 (25 bp)
CAATCTTCCCAACCGGAGGTATTGA
LOC_Os07g18460
OsAffx.28509.1.S1_at--217--8031Chr07:10922879..10922903 (25 bp)
GGAGGTATTGAATTCCAGCCACCCG
LOC_Os07g18460
OsAffx.28509.1.S1_at--366--10251Chr07:10922936..10922960 (25 bp)
TTTGGGTATATCATCGGCCGTCAGC
LOC_Os07g18460
OsAffx.28509.1.S1_at--722--2311Chr07:10923068..10923092 (25 bp)
AAAGTGTTACGTGCTCTCAAGGGAA
LOC_Os07g18460
Target Sequence 
GGGCAGAAACACCACATCTCTAAGGTGTTCTTCAGATCACGTTCTGAAGCTGCCAATAGCAATGCTGTCATTGACAACAG
AGGTGGTGGTCAGAGTGACATGGAGACTTTTGTGTCCGCGAAGAGCTCCGAGTTGTGTTCATTCCGTACCGATGATGACG
ACTCCGAGTCACGATCGTTTCGTCTCAGCCCGTTGCCAATCTTCCCAACCGGAGGTATTGAATTCCAGCCACCCGCCTCT
CCAGTGAAGATAATCAAGAAGCTCCCATTTGGGTATATCATCGGCCGTCAGCTCGACGGCGCCCCCGCAGCAGCGGCGCC
ATCAACGAAGCTCTCATTGAGCTTCAAAAAGTTGATGCATAGGTTGGTTGATAAGTCAAAGTCGAAGATGATCAAGAAGA
AAGTGTTACGTGCTCTCAAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis