Browse Element(s) Details


OsAffx.28512.1.S1_at

Description tigr:9635.m01884
TID=OsAffx.28512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1868010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18640NANA7+11019166..11020719retrotransposon, putative, centromere-specific
LOC_Os07g18660OsAffx.21039.2.S1_at11/117+11024900..11029628hypothetical protein
LOC_Os07g18660OsAffx.28511.1.S1_at1/117+11024900..11029628hypothetical protein
LOC_Os07g18670OsAffx.28511.1.S1_at11/117+11031928..11033821hypothetical protein
LOC_Os07g18680OsAffx.28512.2.S1_s_at11/117+11036307..11038689hypothetical protein
LOC_Os07g18680OsAffx.28512.1.S1_at10/117+11036307..11038689hypothetical protein
LOC_Os07g18690Os.45173.1.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18690OsAffx.31892.2.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative
LOC_Os07g18710Os.30965.1.S1_at11/117+11058618..11060085F-box domain containing protein, expressed
LOC_Os07g18720Os.37765.1.S1_at10/117+11063192..11073589expressed protein
LOC_Os07g18720Os.11874.1.S1_s_at6/117+11063192..11073589expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28512.1.S1_at--168--951Chr07:11038601..11038625 (25 bp)
CGGACCCAATTTATACAACTGACTA
LOC_Os07g18680
OsAffx.28512.1.S1_at--480--2551Chr07:11038585..11038609 (25 bp)
AACTGACTATGACATTCGCCCCAAA
LOC_Os07g18680
OsAffx.28512.1.S1_at--633--5671Chr07:11038575..11038599 (25 bp)
GACATTCGCCCCAAATTAATTAGTA
LOC_Os07g18680
OsAffx.28512.1.S1_at--1097--9972Chr04:10649137..10649162 (25 bp)
TACCATCATCTAGGGACTTTGAGCA
NONE
OsAffx.28512.1.S1_at--827--7171NONE
GTCTGCTCATGATTCAACCTTTAAG
NONE
OsAffx.28512.1.S1_at--206--10491Chr07:11036862..11036886 (25 bp)
TTAAGCTCTCATCTAAACCTCGGGA
LOC_Os07g18680
OsAffx.28512.1.S1_at--983--5591Chr07:11036824..11036848 (25 bp)
GAAATTCAGCTTTCGGAAATCTCTA
LOC_Os07g18680
OsAffx.28512.1.S1_at--718--8131Chr07:11036810..11036834 (25 bp)
GGAAATCTCTATCGAGTTTGAGGAT
LOC_Os07g18680
OsAffx.28512.1.S1_at--713--6071Chr07:11036797..11036821 (25 bp)
GAGTTTGAGGATGGTCATTCTGAAG
LOC_Os07g18680
OsAffx.28512.1.S1_at--213--491Chr07:11036732..11036756 (25 bp)
ACCTGCCCCAGGTAGTCCCTTTGAG
LOC_Os07g18680
OsAffx.28512.1.S1_at--191--7251Chr07:11036718..11036742 (25 bp)
GTCCCTTTGAGCTGCTCGAGGAAAA
LOC_Os07g18680
Target Sequence 
CGGACCCAATTTATACAACTGACTATGACATTCGCCCCAAATTAATTAGTATGGTTAGGGAAAACTCTTTTTCTAGTTTT
GATCTAGAAAATCCCTACCATCATCTAGGGACTTTGAGCAAGTCTGCTCATGATTCAACCTTTAAGCTCTCATCTAAACC
TCGGGAGCCGGAGGAAGAAGAAATTCAGCTTTCGGAAATCTCTATCGAGTTTGAGGATGGTCATTCTGAAGACAACGAAA
TCACCTCAAACTATTCCTGTCAAAAGAGACCACCTGCCCCAGGTAGTCCCTTTGAGCTGCTCGAGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis