Browse Element(s) Details


OsAffx.28558.1.S1_at

Description tigr:9635.m02262
TID=OsAffx.28558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2374011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23700Os.54774.1.S1_x_at3/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23700Os.54774.1.S1_at2/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23710Os.9017.1.S1_x_at3/117+13381137..13382436Cytochrome P450 family protein
LOC_Os07g23720Os.51151.1.S1_at11/117+13382752..13384349K+ channel tetramerisation domain containing protein, expressed
LOC_Os07g23730Os.52889.1.S1_at11/117+13387132..13390394Thaumatin family protein, expressed
LOC_Os07g23740OsAffx.28558.1.S1_at11/117+13398473..13400871hypothetical protein
LOC_Os07g23750Os.27313.1.A1_at11/117+13403550..13410326Sterol 3-beta-glucosyltransferase, putative, expressed
LOC_Os07g23760NANA7+13418259..13419015hypothetical protein
LOC_Os07g23770OsAffx.5417.1.S1_at10/117+13424155..13425342hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28558.1.S1_at--287--7751Chr07:13398534..13398558 (25 bp)
GGTGTTATCAAAAAGTGCTCCCTGT
LOC_Os07g23740
OsAffx.28558.1.S1_at--505--9311Chr07:13398552..13398576 (25 bp)
TCCCTGTGACCTTTGAAGCTGCATT
LOC_Os07g23740
OsAffx.28558.1.S1_at--514--1411Chr07:13398640..13398664 (25 bp)
AGACAATCCTAGTCCCTACATTGAG
LOC_Os07g23740
OsAffx.28558.1.S1_at--279--4951Chr07:13398667..13398687 (21 bp)
GCATACGGCTTATTGCTTTACCCTA
LOC_Os07g23740
OsAffx.28558.1.S1_at--1140--5971Chr07:13398781..13398805 (25 bp)
GAGACATCTTCAGACAGGTCGAATT
LOC_Os07g23740
OsAffx.28558.1.S1_at--215--6651Chr07:13400567..13400591 (25 bp)
GTTGATATCCCCACTAATGCTGAGG
LOC_Os07g23740
OsAffx.28558.1.S1_at--143--9771Chr07:13400581..13400605 (25 bp)
TAATGCTGAGGCTGCATCTCTTGAC
LOC_Os07g23740
OsAffx.28558.1.S1_at--41--4971Chr07:13400594..13400618 (25 bp)
GCATCTCTTGACCTTTCTTCAAATG
LOC_Os07g23740
OsAffx.28558.1.S1_at--1141--8271Chr07:13400653..13400677 (25 bp)
GGCATCTTCAGATTTCCAGCACAGA
LOC_Os07g23740
OsAffx.28558.1.S1_at--570--6031Chr07:13400718..13400742 (25 bp)
GAGATGTGCAGCCTTTTATAGCTAT
LOC_Os07g23740
OsAffx.28558.1.S1_at--333--2371Chr07:13400747..13400839 (25 bp)
AAACGATTGCAGTGGTACCGTCAAT
LOC_Os07g23740
Target Sequence 
GGTGTTATCAAAAAGTGCTCCCTGTGACCTTTGAAGCTGCATTATTTAGTCAAGTATTTCTTGGATGGTGGAATTTTAAT
TCATTATGTAACTTTTTTGATAATGGAGACAATCCTAGTCCCTACATTGAGATGCATACGGCTTATTGCTTTACCCTACC
AAATGAGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCGGAAAGCA
TAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGT
CGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTC
TTCAAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCTATGCAAA
TTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATAGGAAAACGATTGCAGTGGTACCGTCAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis