Browse Element(s) Details


OsAffx.28575.1.S1_at

Description tigr:9635.m02426
TID=OsAffx.28575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2532011/11hypothetical protein
LOC_Os04g486701/11hypothetical protein
LOC_Os07g335101/11hypothetical protein
LOC_Os09g158901/11retrotransposon protein, putative, unclassified
LOC_Os07g304401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25270Os.46610.1.A1_x_at1/117+14432687..14437536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25280NANA7+14438570..14439868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g25290NANA7+14441214..14448367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25300NANA7+14450440..14451984retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25310OsAffx.22604.1.S1_x_at1/117+14454596..14457143transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g25320OsAffx.28575.1.S1_at11/117+14461004..14462150hypothetical protein
LOC_Os07g25320Os.21387.3.S1_x_at1/117+14461004..14462150hypothetical protein
LOC_Os07g25320Os.27102.1.S1_x_at1/117+14461004..14462150hypothetical protein
LOC_Os07g25320Os.21387.3.S1_at1/117+14461004..14462150hypothetical protein
LOC_Os07g25330Os.51869.1.S1_at1/117+14463871..14470603retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25340OsAffx.22385.1.S1_x_at4/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25340OsAffx.20329.1.S1_at1/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25349NANA7+14479093..14480173NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28575.1.S1_at--609--4213Chr07:14461159..14461574 (25 bp)
CCGCCCGATGGCAGATCAGGATTCA
LOC_Os07g25320
OsAffx.28575.1.S1_at--210--1252Chr11:13125580..13125600 (21 bp)
AGATCAGGATTCACCCGCTACTTGG
NONE
OsAffx.28575.1.S1_at--71--8592Chr07:14461584..14461608 (25 bp)
TGGGAGTTGGGCTTACCCCGATCAG
LOC_Os07g25320
OsAffx.28575.1.S1_at--987--7531Chr07:14461592..14461616 (25 bp)
GGGCTTACCCCGATCAGAGGGATAT
LOC_Os07g25320
OsAffx.28575.1.S1_at--576--1331Chr07:14461607..14461631 (25 bp)
AGAGGGATATGTTATTGAGCTGCAT
LOC_Os07g25320
OsAffx.28575.1.S1_at--3--1611Chr07:14461624..14461648 (25 bp)
AGCTGCATAGGATGATGAGGCGTCT
LOC_Os07g25320
OsAffx.28575.1.S1_at--205--911Chr07:14461641..14461665 (25 bp)
AGGCGTCTGCGGTACTCTGGATTTC
LOC_Os07g25320
OsAffx.28575.1.S1_at--140--9471Chr07:14461656..14461680 (25 bp)
TCTGGATTTCCGACCTATCGAGTGA
LOC_Os07g25320
OsAffx.28575.1.S1_at--106--3311Chr07:14461723..14461747 (25 bp)
CACAAGTCCCTTCCGAGTTAGAGTA
LOC_Os07g25320
OsAffx.28575.1.S1_at--1116--6731Chr07:14461739..14461763 (25 bp)
GTTAGAGTACAGCTTTCCGACGCGT
LOC_Os07g25320
OsAffx.28575.1.S1_at--797--8058Chr11:13402720..13402807 (25 bp)
GGAGAGCAACTCAGCTGAGGCAGTA
NONE
Target Sequence 
CCGCCCGATGGCAGATCAGGATTCACCCGCTACTTGGGAGTTGGGCTTACCCCGATCAGAGGGATATGTTATTGAGCTGC
ATAGGATGATGAGGCGTCTGCGGTACTCTGGATTTCCGACCTATCGAGTGAGACAGTGTGGGTCAGTTTGGGAGGCTCGG
GTCGAGGTTCACCCACAAGTCCCTTCCGAGTTAGAGTACAGCTTTCCGACGCGTCACCGCCGAGACCTGCCAGAGACCGC
GATGCAGGATGCAGCCCGGGAGGCCTTTCTCCGACTCAGCTCTATCCACCGAGCTGAGTTGGCGAGTACCGAGTTTGCTC
ATCACCCGTTCCGGGAGGAGAGCAACTCAGCTGAGGCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis