Browse Element(s) Details


OsAffx.28616.1.S1_at

Description tigr:9635.m02613
TID=OsAffx.28616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g474802/11hypothetical protein
LOC_Os05g199801/11hypothetical protein
LOC_Os09g168991/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47480OsAffx.17242.1.S1_at3/113+26806770..26807924hypothetical protein
LOC_Os03g47480OsAffx.28616.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.27980.1.S1_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.3.S1_x_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47490OsAffx.25607.1.S1_at11/113+26808726..26811149hypothetical protein
LOC_Os03g47500Os.10547.1.S1_at11/113+26812209..26814172Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g47510OsAffx.25608.1.S1_at10/113+26817715..26821692hypothetical protein
LOC_Os03g47530NANA3+26827317..26828548Glycosyl transferase family 8 protein, expressed
LOC_Os03g47540OsAffx.25610.1.S1_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47540OsAffx.25610.1.S1_s_at11/113+26831220..26834431hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28616.1.S1_at--822--4231Chr07:15709097..15709121 (25 bp)
CCGGTGGCTATTGAGGCGAAGTCAT
NONE
OsAffx.28616.1.S1_at--615--8291Chr07:15709102..15709126 (25 bp)
GGCTATTGAGGCGAAGTCATTGCTT
NONE
OsAffx.28616.1.S1_at--485--51Chr07:15709106..15709130 (25 bp)
ATTGAGGCGAAGTCATTGCTTCGGG
NONE
OsAffx.28616.1.S1_at--130--5451Chr07:15709141..15709165 (25 bp)
GAACGCCGGGCAACACCTTAACTAG
NONE
OsAffx.28616.1.S1_at--374--4492Chr10:3655879..3655899 (21 bp)
GCCGGGCAACACCTTAACTAGCAAG
NONE
OsAffx.28616.1.S1_at--852--4391Chr07:15709185..15709209 (25 bp)
GCCAAGAGCAACAACTGGCGATTGC
NONE
OsAffx.28616.1.S1_at--965--2451Chr07:15709194..15709218 (25 bp)
AACAACTGGCGATTGCTCCACGTCG
NONE
OsAffx.28616.1.S1_at--386--1951Chr07:15709198..15709222 (25 bp)
ACTGGCGATTGCTCCACGTCGGCGA
NONE
OsAffx.28616.1.S1_at--712--8154Chr08:3574047..3574069 (23 bp)
GGAAATGACACTCCAATTTGCATCT
NONE
OsAffx.28616.1.S1_at--1151--8955Chr08:3574050..3574074 (25 bp)
TGACACTCCAATTTGCATCTGCATA
NONE
OsAffx.28616.1.S1_at--560--2126Chr11:27411083..27411107 (25 bp)
ATTTGCATCTGCATACTCTCCTTCA
NONE
Target Sequence 
CCGGTGGCTATTGAGGCGAAGTCATTGCTTCGGGCCTCGCTCCCGAACGCCGGGCAACACCTTAACTAGCAAGGAGGTGT
TCACCTGGGCCAAGAGCAACAACTGGCGATTGCTCCACGTCGGCGACATTGACATAACAAGGAAGAAAGGAAATGACACT
CCAATTTGCATCTGCATACTCTCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis