Browse Element(s) Details


OsAffx.28635.1.S1_at

Description tigr:9635.m02712
TID=OsAffx.28635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2796011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27920OsAffx.28634.1.S1_at11/117+16282620..16282928hypothetical protein
LOC_Os07g27930Os.5304.1.S1_at9/117+16288275..16291748DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os07g27940NANA7+16293116..16293668Protease inhibitor/seed storage/LTP family protein
LOC_Os07g27950Os.11054.1.S1_at10/117+16301327..16305865Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g27960OsAffx.28635.1.S1_at11/117+16307259..16307887expressed protein
LOC_Os07g27970OsAffx.28637.1.S1_x_at11/117+16313393..16317142O-methyltransferase family protein, expressed
LOC_Os07g27980OsAffx.16446.1.S1_at11/117+16323164..16325862hypothetical protein
LOC_Os07g27980OsAffx.24637.2.S1_x_at1/117+16323164..16325862hypothetical protein
LOC_Os07g28000OsAffx.20497.1.S1_at2/117+16331281..16334644transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28635.1.S1_at--267--9351Chr07:16307833..16307857 (25 bp)
TCGCTCGCGGAGTCTCGTCAGTGGA
LOC_Os07g27960
OsAffx.28635.1.S1_at--858--1151Chr07:16307823..16307847 (25 bp)
AGTCTCGTCAGTGGACGCGGCGCTT
LOC_Os07g27960
OsAffx.28635.1.S1_at--363--3791Chr07:16307820..16307844 (25 bp)
CTCGTCAGTGGACGCGGCGCTTCCT
LOC_Os07g27960
OsAffx.28635.1.S1_at--291--4531Chr07:16307336..16307418 (25 bp)
GCCGCCCGCCTCAATAAAAAAATTG
LOC_Os07g27960
OsAffx.28635.1.S1_at--6--3171Chr07:16307316..16307340 (25 bp)
AATTGCATCCTCAAGACAAATTTCT
LOC_Os07g27960
OsAffx.28635.1.S1_at--308--1411Chr07:16307303..16307327 (25 bp)
AGACAAATTTCTTGCACTTATTGGA
LOC_Os07g27960
OsAffx.28635.1.S1_at--570--2191Chr07:16307301..16307325 (25 bp)
ACAAATTTCTTGCACTTATTGGATG
LOC_Os07g27960
OsAffx.28635.1.S1_at--864--10551Chr07:16307295..16307319 (25 bp)
TTCTTGCACTTATTGGATGCTTCCT
LOC_Os07g27960
OsAffx.28635.1.S1_at--510--3631Chr07:16307293..16307317 (25 bp)
CTTGCACTTATTGGATGCTTCCTAC
LOC_Os07g27960
OsAffx.28635.1.S1_at--1032--9011Chr07:16307291..16307315 (25 bp)
TGCACTTATTGGATGCTTCCTACAT
LOC_Os07g27960
OsAffx.28635.1.S1_at--1112--3311Chr07:16307289..16307313 (25 bp)
CACTTATTGGATGCTTCCTACATGG
LOC_Os07g27960
Target Sequence 
TCGCTCGCGGAGTCTCGTCAGTGGACGCGGCGCTTCCTCCGCGGCCTCGGCGTGGACGGGACCCTCCCGGCCGCCGCGGA
GCTCCCCGCCGCCTACTCCGCGCTCGTCCGCGGCGTCCTCTCCGCCGCCGTCTCCGTCGTCCCCGCCACCCCGGCCTCGC
CGCGCGTCTCCTGCACGCTCACCGTCTCCCCCGCCGCCGTCAACGCGTACAACACGCTCCACGGCGGCATGGTGGCGGCC
GTGGCGGAGGTCGTCGGGATGGCGTGCGCGCGCGCCGCGGCGGGCGACAAGGAGATGTTCCTCGGCGAGCTCAGCGCCGC
CTATCTCTCCGCCGCCCGCCTCAATAAAAAAATTGCATCCTCAAGACAAATTTCTTGCACTTATTGGATGCTTCCTACAT
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis