Browse Element(s) Details


OsAffx.28641.1.S1_at

Description tigr:9635.m02736
TID=OsAffx.28641.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2818011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28140OsAffx.28639.1.S1_at11/117+16433827..16434144hypothetical protein
LOC_Os07g28150OsAffx.16449.1.S1_at10/117+16435044..16435511hAT dimerisation domain-containing protein, putative
LOC_Os07g28160OsAffx.5473.1.S1_at11/117+16436807..16440447Cytochrome P450 family protein
LOC_Os07g28170OsAffx.28640.1.S1_at11/117+16445403..16448876expressed protein
LOC_Os07g28170Os.6809.2.S1_x_at1/117+16445403..16448876expressed protein
LOC_Os07g28180OsAffx.28641.1.S1_at11/117+16452896..16453628hypothetical protein
LOC_Os07g28190NANA7+16457764..16458904retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28200Os.45173.1.S1_x_at1/117+16462847..16470712retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28210OsAffx.22336.1.S1_at11/117+16472161..16476734retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28641.1.S1_at--784--3191Chr07:16453314..16453594 (25 bp)
CAATGCAAGCATCACCAGCTGCACT
LOC_Os07g28180
OsAffx.28641.1.S1_at--314--1691Chr07:16453270..16453294 (25 bp)
ACCAAATCCGGCGACCTATATAAGC
LOC_Os07g28180
OsAffx.28641.1.S1_at--928--9751Chr07:16453250..16453274 (25 bp)
TAAGCCGAATCTAACACCGGGTGGA
LOC_Os07g28180
OsAffx.28641.1.S1_at--843--2891Chr07:16453146..16453170 (25 bp)
AAGGTCCCGAGCAGCCAGATCCACT
LOC_Os07g28180
OsAffx.28641.1.S1_at--915--4411Chr07:16453133..16453157 (25 bp)
GCCAGATCCACTAGCGGGAGACCAA
LOC_Os07g28180
OsAffx.28641.1.S1_at--1077--1611Chr07:16453121..16453145 (25 bp)
AGCGGGAGACCAAACCATCGACGGC
LOC_Os07g28180
OsAffx.28641.1.S1_at--542--1931Chr07:16453090..16453114 (25 bp)
ACGGATCTAGCGCTACACCAAGAGG
LOC_Os07g28180
OsAffx.28641.1.S1_at--1016--1052Chr05:12522981..12523005 (25 bp)
AGGTGGAGGCGGCTCACATCTCTTT
NONE
OsAffx.28641.1.S1_at--651--452Chr05:12522998..12523473 (25 bp)
ATCTCTTTCATCTGGGCGGTTGGAT
NONE
OsAffx.28641.1.S1_at--888--7632Chr05:12523032..12523056 (25 bp)
GGGAGGCTGGCCTCCCTCATTGGTA
NONE
OsAffx.28641.1.S1_at--416--9591Chr07:16452987..16453011 (25 bp)
TCATTGGTAGCTGCGGTGGCCTGAC
LOC_Os07g28180
Target Sequence 
CAATGCAAGCATCACCAGCTGCACTGTTCCTACCTTCTCCTCCTACCAAATCCGGCGACCTATATAAGCCGAATCTAACA
CCGGGTGGAGCTGAGAGGAGAGGGGTGGTGGAGGTGCAGAGAAGGAGAGTAGTAGAGGGTGGCAGCGACGGCTTGCTCCC
TCGCTTCCAAGGTCCCGAGCAGCCAGATCCACTAGCGGGAGACCAAACCATCGACGGCCCGCCAACGGATCTAGCGCTAC
ACCAAGAGGGGCGAAGAAGAAGGTGGAGGCGGCTCACATCTCTTTCATCTGGGCGGTTGGATCCATCTGTGGGGAGGCTG
GCCTCCCTCATTGGTAGCTGCGGTGGCCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis