Browse Element(s) Details


OsAffx.5473.1.S1_at

Description gb:NM_187219.1
DB_XREF= gi:34901523
GEN=P0473C09.19
TID=OsAffx.5473.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450(Obtusifoliol 14-alpha demethylase) (P0473C09.19), mRNA.
PROD=putative cytochrome P450(Obtusifoliol 14-alphademethylase)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2816011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28130Os.35344.18.S1_x_at10/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130Os.35344.3.S1_x_at8/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130OsAffx.22940.5.S1_x_at2/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28140OsAffx.28639.1.S1_at11/117+16433827..16434144hypothetical protein
LOC_Os07g28150OsAffx.16449.1.S1_at10/117+16435044..16435511hAT dimerisation domain-containing protein, putative
LOC_Os07g28160OsAffx.5473.1.S1_at11/117+16436807..16440447Cytochrome P450 family protein
LOC_Os07g28170OsAffx.28640.1.S1_at11/117+16445403..16448876expressed protein
LOC_Os07g28170Os.6809.2.S1_x_at1/117+16445403..16448876expressed protein
LOC_Os07g28180OsAffx.28641.1.S1_at11/117+16452896..16453628hypothetical protein
LOC_Os07g28190NANA7+16457764..16458904retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28200Os.45173.1.S1_x_at1/117+16462847..16470712retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5473.1.S1_at--940--4571Chr07:16439930..16439954 (25 bp)
GCGCTAGAACCGACGATGACCATGA
LOC_Os07g28160
OsAffx.5473.1.S1_at--222--6391Chr07:16439953..16439977 (25 bp)
GATCGCGTCAACTATGATACCGTGC
LOC_Os07g28160
OsAffx.5473.1.S1_at--309--9971Chr07:16439970..16439994 (25 bp)
TACCGTGCAGGAGATGACCACTCTG
LOC_Os07g28160
OsAffx.5473.1.S1_at--914--1771Chr07:16440030..16440054 (25 bp)
ACCGGCAGTGGCAATGTTCCGTCAA
LOC_Os07g28160
OsAffx.5473.1.S1_at--1132--8231Chr07:16440113..16440137 (25 bp)
GGCACACGGTGATGAGCACGATCTT
LOC_Os07g28160
OsAffx.5473.1.S1_at--1103--10831Chr07:16440136..16440160 (25 bp)
TTGGTGAACCACCACATGCCCAATG
LOC_Os07g28160
OsAffx.5473.1.S1_at--276--591Chr07:16440151..16440175 (25 bp)
ATGCCCAATGTCTACAAGGACCCTC
LOC_Os07g28160
OsAffx.5473.1.S1_at--412--791Chr07:16440176..16440200 (25 bp)
ATGTGTTTGACCCTTCACGGTTTGC
LOC_Os07g28160
OsAffx.5473.1.S1_at--268--8291Chr07:16440263..16440287 (25 bp)
GGCATTCATGCGCAGGTGAGTCCTT
LOC_Os07g28160
OsAffx.5473.1.S1_at--68--1151Chr07:16440281..16440305 (25 bp)
AGTCCTTCGCGTACACACAGATAAA
LOC_Os07g28160
OsAffx.5473.1.S1_at--968--2791Chr07:16440343..16440367 (25 bp)
AAGATGGTATCTCCTTTCCCTGAGA
LOC_Os07g28160
Target Sequence 
GCGCTAGAACCGACGATGACCATGATCGCGTCAACTATGATACCGTGCAGGAGATGACCACTCTGCACCGCTGCATCAAG
GAGGCGCTCCGACTGCACCCACCGGCAGTGGCAATGTTCCGTCAAGCCCGCAAGCACTTCACCGTGCAGACAAAGGAAGG
TAAAGAGTACACGATCCCAGGAGGGCACACGGTGATGAGCACGATCTTGGTGAACCACCACATGCCCAATGTCTACAAGG
ACCCTCATGTGTTTGACCCTTCACGGTTTGCACGCGGTAGGGGGGAAGACAAGGCCGCTGGCCCCTTCTCCTTCCTGGCC
TTTGGCGCCGGGAGGCATTCATGCGCAGGTGAGTCCTTCGCGTACACACAGATAAAGGTGATATGGAGCCATTTGCTGAG
GAACTTTGAGCTCAAGATGGTATCTCCTTTCCCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis