Browse Element(s) Details


OsAffx.28639.1.S1_at

Description tigr:9635.m02732
TID=OsAffx.28639.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2814011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28130Os.35344.18.S1_x_at10/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130Os.35344.3.S1_x_at8/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130OsAffx.22940.5.S1_x_at2/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28140OsAffx.28639.1.S1_at11/117+16433827..16434144hypothetical protein
LOC_Os07g28150OsAffx.16449.1.S1_at10/117+16435044..16435511hAT dimerisation domain-containing protein, putative
LOC_Os07g28160OsAffx.5473.1.S1_at11/117+16436807..16440447Cytochrome P450 family protein
LOC_Os07g28170OsAffx.28640.1.S1_at11/117+16445403..16448876expressed protein
LOC_Os07g28170Os.6809.2.S1_x_at1/117+16445403..16448876expressed protein
LOC_Os07g28180OsAffx.28641.1.S1_at11/117+16452896..16453628hypothetical protein
LOC_Os07g28190NANA7+16457764..16458904retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28639.1.S1_at--141--1711Chr07:16433857..16433881 (25 bp)
ACCACCGTCGTCATATGGACAGCGC
LOC_Os07g28140
OsAffx.28639.1.S1_at--960--7191Chr07:16433863..16433887 (25 bp)
GTCGTCATATGGACAGCGCTGCAGA
LOC_Os07g28140
OsAffx.28639.1.S1_at--304--10111Chr07:16433870..16433894 (25 bp)
TATGGACAGCGCTGCAGAAGAGAAA
LOC_Os07g28140
OsAffx.28639.1.S1_at--1131--1411Chr07:16433890..16433914 (25 bp)
AGAAAGCGTGGCGAAGCCTGCCCAG
LOC_Os07g28140
OsAffx.28639.1.S1_at--1149--4491Chr07:16433931..16433955 (25 bp)
GCCGATTGTGCAGGGAACCGCTCTT
LOC_Os07g28140
OsAffx.28639.1.S1_at--89--31Chr07:16433935..16433959 (25 bp)
ATTGTGCAGGGAACCGCTCTTGTAC
LOC_Os07g28140
OsAffx.28639.1.S1_at--1142--2611Chr07:16433946..16433970 (25 bp)
AACCGCTCTTGTACGGTTCTTGCGC
LOC_Os07g28140
OsAffx.28639.1.S1_at--142--8451Chr07:16433987..16434011 (25 bp)
GGCCACTAGAGGTGATCCGCGAGCA
LOC_Os07g28140
OsAffx.28639.1.S1_at--1057--7571Chr07:16434055..16434079 (25 bp)
GGGCTGTTCAAGGTGACCTTCTTGG
LOC_Os07g28140
OsAffx.28639.1.S1_at--1143--8771Chr07:16434059..16434083 (25 bp)
TGTTCAAGGTGACCTTCTTGGTCGG
LOC_Os07g28140
OsAffx.28639.1.S1_at--29--4871Chr07:16434090..16434114 (25 bp)
GCTAGGATTTTTGATTGATGGTGTC
LOC_Os07g28140
Target Sequence 
ACCACCGTCGTCATATGGACAGCGCTGCAGAAGAGAAAGCGTGGCGAAGCCTGCCCAGCCGCGGTGGCGCCGCCGCCGAT
TGTGCAGGGAACCGCTCTTGTACGGTTCTTGCGCGCCATGGCAAGGGACGGGCCACTAGAGGTGATCCGCGAGCAGCTGG
CGAAGCTGGGGAGCGTGTTCATGGCGAGCGCCCCGTTGGGGCTGTTCAAGGTGACCTTCTTGGTCGGGGCGGAGCTAGGA
TTTTTGATTGATGGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis