Browse Element(s) Details


OsAffx.28649.1.S1_at

Description tigr:9635.m02788
TID=OsAffx.28649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g286809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28650Os.34131.1.S1_s_at9/117+16769105..16771242hAT family dimerisation domain containing protein
LOC_Os07g28660NANA7+16773500..16774039hypothetical protein
LOC_Os07g28670OsAffx.8127.1.S1_at1/117+16786551..16793577retrotransposon protein, putative, unclassified
LOC_Os07g28680OsAffx.28649.1.S1_at9/117+16795094..16796359hypothetical protein
LOC_Os07g28690OsAffx.5475.1.S1_at11/117+16797046..16797626hypothetical protein
LOC_Os07g28700OsAffx.28650.1.S1_x_at9/117+16800528..16801444hypothetical protein
LOC_Os07g28710NANA7+16809299..1680962860S acidic ribosomal protein P2B, putative
LOC_Os07g28720Os.55731.1.S1_at3/117+16814814..16815104hypothetical protein
LOC_Os07g28730NANA7+16817436..16817795retrotransposon protein, putative, unclassified
LOC_Os07g28740NANA7+16818531..16820587retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28649.1.S1_at--735--9311Chr07:9299199..9299452 (25 bp)
AGGCACATGGCATGGCATATAGTGC
NONE
OsAffx.28649.1.S1_at--513--8491Chr07:16796298..16796322 (25 bp)
TGGCATGGCATATAGTGCCAACACT
LOC_Os07g28680
OsAffx.28649.1.S1_at--1117--7251Chr07:16796284..16796308 (25 bp)
GTGCCAACACTAGATGTACGGACGT
LOC_Os07g28680
OsAffx.28649.1.S1_at--135--2191Chr07:16796278..16796302 (25 bp)
ACACTAGATGTACGGACGTGCGCTA
LOC_Os07g28680
OsAffx.28649.1.S1_at--307--733Chr03:18279485..18279505 (21 bp)
ATGTACGGACGTGCGCTAAGAAGTG
NONE
OsAffx.28649.1.S1_at--1119--9711Chr07:16796255..16796279 (25 bp)
TAAGAAGTGGCGTGTTCCTGAACAT
LOC_Os07g28680
OsAffx.28649.1.S1_at--1104--7411Chr07:16796244..16796268 (25 bp)
GTGTTCCTGAACATTTGCCTATATG
LOC_Os07g28680
OsAffx.28649.1.S1_at--864--10273Chr12:13729196..13729218 (23 bp)
TTTGCCTATATGCTTGTGTGGCTAC
NONE
OsAffx.28649.1.S1_at--390--9071NONE
TGCTTGTGTGGCTACATGGATTCCT
NONE
OsAffx.28649.1.S1_at--1052--7511NONE
GTGGCTACATGGATTCCTGGCAGCT
NONE
OsAffx.28649.1.S1_at--386--2119Chr06:15694156..15694175 (20 bp)
ACATGGATTCCTGGCAGCTCGGTAG
NONE
Target Sequence 
AGGCACATGGCATGGCATATAGTGCCAACACTAGATGTACGGACGTGCGCTAAGAAGTGGCGTGTTCCTGAACATTTGCC
TATATGCTTGTGTGGCTACATGGATTCCTGGCAGCTCGGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis