Browse Element(s) Details


OsAffx.28660.1.S1_at

Description tigr:9635.m02880
TID=OsAffx.28660.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2958011/11hypothetical protein
LOC_Os02g337303/11Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os04g425601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29550OsAffx.30451.1.S1_s_at4/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29550OsAffx.12135.1.S1_x_at2/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29550OsAffx.12135.1.S1_at1/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29550OsAffx.30451.3.S1_x_at1/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29560NANA7+17359843..17360502hypothetical protein
LOC_Os07g29570NANA7+17363892..17368948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29580OsAffx.28660.1.S1_at11/117+17373833..17374216hypothetical protein
LOC_Os07g29580OsAffx.28660.1.S1_x_at11/117+17373833..17374216hypothetical protein
LOC_Os07g29590OsAffx.10637.1.S1_s_at6/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.3.S1_s_at4/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29590OsAffx.10637.4.S1_s_at2/117+17379544..17382866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29594OsAffx.30389.2.S1_at4/117+17394303..17394710hypothetical protein
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750cellular_componentrespiratory chain complex III (sensu Eukaryota)
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28660.1.S1_at--463--8351Chr07:17374081..17374105 (25 bp)
GGCGGCGTTGCGTGAGGCTGGATTG
LOC_Os07g29580
OsAffx.28660.1.S1_at--286--8371Chr07:17374084..17374108 (25 bp)
GGCGTTGCGTGAGGCTGGATTGGAT
LOC_Os07g29580
OsAffx.28660.1.S1_at--106--9153Chr07:17374089..17374113 (25 bp)
TGCGTGAGGCTGGATTGGATGTGTG
LOC_Os07g29580
OsAffx.28660.1.S1_at--481--6812Chr07:17374134..17374158 (25 bp)
GTTTATTGGGCTTACTGGGCCTCCT
LOC_Os07g29580
OsAffx.28660.1.S1_at--688--12Chr07:17374138..17374162 (25 bp)
ATTGGGCTTACTGGGCCTCCTAGGC
LOC_Os07g29580
OsAffx.28660.1.S1_at--297--8292Chr07:17374142..17374166 (25 bp)
GGCTTACTGGGCCTCCTAGGCTTAT
LOC_Os07g29580
OsAffx.28660.1.S1_at--33--4891Chr07:17374143..17374167 (25 bp)
GCTTACTGGGCCTCCTAGGCTTATT
LOC_Os07g29580
OsAffx.28660.1.S1_at--988--10451Chr07:17374145..17374169 (25 bp)
TTACTGGGCCTCCTAGGCTTATTGG
LOC_Os07g29580
OsAffx.28660.1.S1_at--389--9912Chr07:17374146..17374170 (25 bp)
TACTGGGCCTCCTAGGCTTATTGGG
LOC_Os07g29580
OsAffx.28660.1.S1_at--1136--4273Chr07:17374156..17374180 (25 bp)
CCTAGGCTTATTGGGCCAAAATTCG
LOC_Os07g29580
OsAffx.28660.1.S1_at--217--8533Chr07:17374158..17374182 (25 bp)
TAGGCTTATTGGGCCAAAATTCGGT
LOC_Os07g29580
Target Sequence 
GGCGGCGTTGCGTGAGGCTGGATTGGATGTGTGGTTGCCTTTAGGGTTTAGTAGTTTATTGGGCTTACTGGGCCTCCTAG
GCTTATTGGGCCAAAATTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis