Browse Element(s) Details


OsAffx.28682.1.S1_at

Description tigr:9635.m02989
TID=OsAffx.28682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30510OsAffx.28680.1.S1_at10/117+18045363..18049416Protein kinase domain containing protein
LOC_Os07g30520OsAffx.28681.1.S1_x_at11/117+18054436..18055022hypothetical protein
LOC_Os07g30530Os.10827.1.S1_x_at10/117+18059726..18063514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30530Os.46055.2.S1_x_at6/117+18059726..18063514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30540OsAffx.28545.4.S1_s_at11/117+18063653..18064669hypothetical protein
LOC_Os07g30550OsAffx.25936.1.S1_s_at8/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30550OsAffx.25936.7.S1_s_at7/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30550OsAffx.25936.2.S1_x_at5/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30550OsAffx.25936.5.S1_x_at2/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30560OsAffx.28682.1.S1_at11/117+18074289..18074663hypothetical protein
LOC_Os07g30560OsAffx.28682.2.S1_at9/117+18074289..18074663hypothetical protein
LOC_Os07g30560OsAffx.28682.2.S1_x_at8/117+18074289..18074663hypothetical protein
LOC_Os07g30570NANA7+18087573..18090393retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30580Os.10703.2.S1_x_at1/117+18090814..18096924retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28682.1.S1_at--22--3792Chr07:18074389..18074527 (25 bp)
CTCGGCAAGGGAAAGATCGTCTTGA
LOC_Os07g30560
OsAffx.28682.1.S1_at--1000--6392Chr07:18074375..18074399 (25 bp)
GATCGTCTTGATTTAGCTGTGCACC
LOC_Os07g30560
OsAffx.28682.1.S1_at--291--9412Chr07:18074373..18074397 (25 bp)
TCGTCTTGATTTAGCTGTGCACCAT
LOC_Os07g30560
OsAffx.28682.1.S1_at--41--7152Chr07:18074371..18074395 (25 bp)
GTCTTGATTTAGCTGTGCACCATGC
LOC_Os07g30560
OsAffx.28682.1.S1_at--544--10792Chr07:18074368..18074392 (25 bp)
TTGATTTAGCTGTGCACCATGCTCT
LOC_Os07g30560
OsAffx.28682.1.S1_at--116--192Chr07:18074365..18074389 (25 bp)
ATTTAGCTGTGCACCATGCTCTCAT
LOC_Os07g30560
OsAffx.28682.1.S1_at--1136--9992Chr07:18074362..18074386 (25 bp)
TAGCTGTGCACCATGCTCTCATCAA
LOC_Os07g30560
OsAffx.28682.1.S1_at--440--2652Chr07:18074339..18074363 (25 bp)
AACCAATCTGGAATCTTGGTCACCA
LOC_Os07g30560
OsAffx.28682.1.S1_at--652--3192Chr07:18074336..18074360 (25 bp)
CAATCTGGAATCTTGGTCACCACAT
LOC_Os07g30560
OsAffx.28682.1.S1_at--52--9472Chr07:18074333..18074357 (25 bp)
TCTGGAATCTTGGTCACCACATTGT
LOC_Os07g30560
OsAffx.28682.1.S1_at--773--8192Chr07:18074330..18074354 (25 bp)
GGAATCTTGGTCACCACATTGTCAA
LOC_Os07g30560
Target Sequence 
CTCGGCAAGGGAAAGATCGTCTTGATTTAGCTGTGCACCATGCTCTCATCAACCAATCTGGAATCTTGGTCACCACATTG
TCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis