Browse Element(s) Details


OsAffx.2871.1.S1_at

Description tigr:9630.m03385
TID=OsAffx.2871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35540OsAffx.24586.1.S1_at11/112+21367767..21370415expressed protein
LOC_Os02g35550OsAffx.2871.1.S1_at11/112+21387493..21388078hypothetical protein
LOC_Os02g35560Os.50551.1.S1_at11/112+21390486..21393861F-box domain containing protein, expressed
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2871.1.S1_at--1125--6211Chr02:21387608..21387632 (25 bp)
GAGGCCAGCGGTGGGAATGCCGGAA
LOC_Os02g35550
OsAffx.2871.1.S1_at--898--3931Chr02:21387628..21387652 (25 bp)
CGGAAGGTGCGGATCTGGTGACAGG
LOC_Os02g35550
OsAffx.2871.1.S1_at--294--5651Chr02:21387647..21387671 (25 bp)
GACAGGGAGCTCAATAACGGCAAAT
LOC_Os02g35550
OsAffx.2871.1.S1_at--1046--3071Chr02:21387659..21387683 (25 bp)
AATAACGGCAAATCTGGCGGCTTGG
LOC_Os02g35550
OsAffx.2871.1.S1_at--1039--8311Chr02:21387684..21387708 (25 bp)
GGCTCGGTAACGGTAGCAACGACGA
LOC_Os02g35550
OsAffx.2871.1.S1_at--518--1471Chr02:21387698..21387722 (25 bp)
AGCAACGACGATGACTGTGGCATGT
LOC_Os02g35550
OsAffx.2871.1.S1_at--1143--1071Chr02:21387755..21387779 (25 bp)
AGGGCGACGGGTGTGGATCCATTGA
LOC_Os02g35550
OsAffx.2871.1.S1_at--1084--7891Chr02:21387797..21387821 (25 bp)
GGTTCGGTGGTGGACGATCCGACGG
LOC_Os02g35550
OsAffx.2871.1.S1_at--932--8111Chr02:21387823..21387847 (25 bp)
GGACGGCAGGGAAGGGCTCAGACTT
LOC_Os02g35550
OsAffx.2871.1.S1_at--501--3611Chr02:21387845..21387869 (25 bp)
CTTGGATGGCGGTGGATGAGGGCTC
LOC_Os02g35550
OsAffx.2871.1.S1_at--390--6131Chr02:21387862..21387886 (25 bp)
GAGGGCTCGGGCTCCAGCGACGGTG
LOC_Os02g35550
Target Sequence 
GAGGCCAGCGGTGGGAATGCCGGAAGGTGCGGATCTGGTGACAGGGAGCTCAATAACGGCAAATCTGGCGGCTTGGGGCT
CGGTAACGGTAGCAACGACGATGACTGTGGCATGTGGGTGGAAGGGTGGAAGAGGCTGGCGGTGGGGAGGGCGACGGGTG
TGGATCCATTGATGGGGAGCTCAACGTGGGGTTCGGTGGTGGACGATCCGACGGGGGACGGCAGGGAAGGGCTCAGACTT
GGATGGCGGTGGATGAGGGCTCGGGCTCCAGCGACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis