Browse Element(s) Details


OsAffx.28726.3.S1_at

Description tigr:9635.m03251
TID=OsAffx.28726.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3304011/11hypothetical protein
LOC_Os07g328704/11hypothetical protein
LOC_Os07g329901/11hypothetical protein
LOC_Os07g328301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33000NANA7+19711501..19714641retrotransposon protein, putative, unclassified
LOC_Os07g33010NANA7+19715765..19721920retrotransposon protein, putative, unclassified
LOC_Os07g33020NANA7+19725612..19726449hypothetical protein
LOC_Os07g33030OsAffx.28726.1.S1_at8/117+19730151..19730834hypothetical protein
LOC_Os07g33040OsAffx.28726.3.S1_at11/117+19734760..19735260hypothetical protein
LOC_Os07g33050OsAffx.28725.1.S1_at11/117+19738699..19741162expressed protein
LOC_Os07g33060OsAffx.16536.1.S1_at11/117+19742359..19744536hypothetical protein
LOC_Os07g33070OsAffx.28726.4.S1_x_at2/117+19746295..19746753hypothetical protein
LOC_Os07g33080OsAffx.16937.1.S1_at9/117+19749503..19751997hypothetical protein
LOC_Os07g33090OsAffx.28726.4.S1_x_at11/117+19756747..19757229hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28726.3.S1_at--362--4371Chr07:19734842..19734866 (25 bp)
CCAAGAAGCCATCAGCAGGGTCGCC
LOC_Os07g33040
OsAffx.28726.3.S1_at--142--2751Chr07:19734844..19734868 (25 bp)
AAGAAGCCATCAGCAGGGTCGCCCG
LOC_Os07g33040
OsAffx.28726.3.S1_at--1104--1431Chr07:19734845..19734869 (25 bp)
AGAAGCCATCAGCAGGGTCGCCCGT
LOC_Os07g33040
OsAffx.28726.3.S1_at--34--3571Chr07:19734851..19734875 (25 bp)
CATCAGCAGGGTCGCCCGTCAAGAA
LOC_Os07g33040
OsAffx.28726.3.S1_at--836--5011Chr07:19734856..19734880 (25 bp)
GCAGGGTCGCCCGTCAAGAAGATGT
LOC_Os07g33040
OsAffx.28726.3.S1_at--211--1072Chr07:19734858..19734882 (25 bp)
AGGGTCGCCCGTCAAGAAGATGTCA
LOC_Os07g33040
OsAffx.28726.3.S1_at--312--7692Chr07:19734859..19734883 (25 bp)
GGGTCGCCCGTCAAGAAGATGTCAT
LOC_Os07g33040
OsAffx.28726.3.S1_at--979--7792Chr07:19734860..19734884 (25 bp)
GGTCGCCCGTCAAGAAGATGTCATC
LOC_Os07g33040
OsAffx.28726.3.S1_at--672--8352Chr07:19734897..19734921 (25 bp)
GGCGACGCCCGTGTCCTTCAAGAAG
LOC_Os07g33040
OsAffx.28726.3.S1_at--463--4612Chr07:19734898..19734922 (25 bp)
GCGACGCCCGTGTCCTTCAAGAAGG
LOC_Os07g33040
OsAffx.28726.3.S1_at--730--3913Chr07:19735172..19735196 (25 bp)
CGGCCGGCAAGAATCTGCCGCGGCT
LOC_Os07g33040
Target Sequence 
CCAAGAAGCCATCAGCAGGGTCGCCCGTCAAGAAGATGTCATCCGCGCCGTCGACGGCGACGCCCGTGTCCTTCAAGAAG
GGCGACGAGGTGCGCGTCCGCACGCCGGTGGGGAGGCTAGGCACCACGGCGCTGCGCCTCGTCATGTGGCTCGGCGCGGT
CGTCGTCTCCGACTCCGACGCCGACGACGGACACCTCGAGGTCATCTACAACGGCAACTTCCCGCGCGACGACCCATTCC
GGACCGTGCGCGTCGCCGTAAAGGACGTCAAGCTGCCCGCGCCGCGCCCGGCCCCGACCCCGGCTAACATGGCGGCCCCG
CGGCCGACCACGGCCGGCAAGAATCTGCCGCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28726.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis