Browse Element(s) Details


OsAffx.28742.1.S1_at

Description tigr:9635.m03392
TID=OsAffx.28742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3436011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34320OsAffx.5526.1.S1_at11/117+20560788..20565965Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g34330NANA7+20569585..20569866hypothetical protein
LOC_Os07g34340OsAffx.28741.1.S1_at11/117+20582492..20585296hypothetical protein
LOC_Os07g34350NANA7+20586355..20587018hypothetical protein
LOC_Os07g34360OsAffx.28742.1.S1_at11/117+20588380..20589410hypothetical protein
LOC_Os07g34370OsAffx.28739.1.S1_at11/117+20595058..20598510hypothetical protein
LOC_Os07g34370OsAffx.28739.2.S1_at1/117+20595058..20598510hypothetical protein
LOC_Os07g34380OsAffx.28743.1.S1_at10/117+20600967..20602349hypothetical protein
LOC_Os07g34390OsAffx.16553.1.S1_at11/117+20614020..20618903ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28742.1.S1_at--674--2712Chr09:18777895..18777915 (21 bp)
AAGCATCCACCAGAGCTTGTCTGAT
NONE
OsAffx.28742.1.S1_at--838--3531Chr07:20589345..20589369 (25 bp)
CATCCACCAGAGCTTGTCTGATGGG
LOC_Os07g34360
OsAffx.28742.1.S1_at--453--8451Chr07:20589314..20589338 (25 bp)
TGGCCCAGGCCATCGATGATGGCAT
LOC_Os07g34360
OsAffx.28742.1.S1_at--833--6231Chr07:20589297..20589321 (25 bp)
GATGGCATCACTCCACACCGTGGCA
LOC_Os07g34360
OsAffx.28742.1.S1_at--338--2171Chr07:20589283..20589307 (25 bp)
ACACCGTGGCAAAGAGCGCCGCAGG
LOC_Os07g34360
OsAffx.28742.1.S1_at--621--3471Chr07:20588955..20589266 (25 bp)
CAGGGTTCTGGCGACAGTGAGTTAA
LOC_Os07g34360
OsAffx.28742.1.S1_at--1071--4591Chr07:20588945..20589256 (25 bp)
GCGACAGTGAGTTAATGGATACATC
LOC_Os07g34360
OsAffx.28742.1.S1_at--407--2971Chr07:20588932..20588956 (25 bp)
AATGGATACATCATATCTGATATTG
LOC_Os07g34360
OsAffx.28742.1.S1_at--240--3871Chr07:20588916..20588940 (25 bp)
CTGATATTGCAGTTTGAGGATGAAT
LOC_Os07g34360
OsAffx.28742.1.S1_at--730--8871Chr07:20588902..20588926 (25 bp)
TGAGGATGAATTTCCGACTGGGCGA
LOC_Os07g34360
OsAffx.28742.1.S1_at--739--4631Chr07:20588592..20588616 (25 bp)
GCGTGCCATGCGGTCAAGGAGGGTG
LOC_Os07g34360
Target Sequence 
AAGCATCCACCAGAGCTTGTCTGATGGGGCGAGGTGGCCCAGGCCATCGATGATGGCATCACTCCACACCGTGGCAAAGA
GCGCCGCAGGGGTTCCGACGGTGGCTCAGGGTTCTGGCGACAGTGAGTTAATGGATACATCATATCTGATATTGCAGTTT
GAGGATGAATTTCCGACTGGGCGACAAATTGAGAGATCAAAGGGGGCCCTCTTCGCACGCCCCGGTGGCCGCGCGTGCCA
TGCGGTCAAGGAGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis