Browse Element(s) Details


OsAffx.28747.1.S1_at

Description tigr:9635.m03401
TID=OsAffx.28747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3444011/11lipase class 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34410Os.53892.1.S1_at11/117+20639805..20644204retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34420OsAffx.28745.1.S1_at11/117+20645291..20645911lipase class 3 family protein, putative
LOC_Os07g34430NANA7+20648608..20649326hypothetical protein
LOC_Os07g34440OsAffx.28747.1.S1_at11/117+20650553..20652352lipase class 3, putative
LOC_Os07g34450Os.26886.3.S1_x_at6/117+20654923..20658140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34450Os.26886.1.S1_x_at5/117+20654923..20658140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34460Os.53142.1.S1_at2/117+20659951..20661588transposon protein, putative, unclassified
LOC_Os07g34470NANA7+20663345..20663938transposon protein, putative, unclassified
LOC_Os07g34480Os.53142.1.S1_at2/117+20666198..20669010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g34490NANA7+20670562..20671387retrotransposon protein, putative, unclassified
LOC_Os07g34500Os.26886.2.S1_s_at11/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34500Os.26886.6.S1_s_at10/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34500OsAffx.16467.1.S1_at9/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34500OsAffx.3425.1.S1_at1/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28747.1.S1_at--1158--1591Chr07:20651780..20651804 (25 bp)
AGCTGCATTGTTTGGCTCGCGGGAC
LOC_Os07g34440
OsAffx.28747.1.S1_at--804--1631Chr07:20651914..20651938 (25 bp)
AGCGATCGATGTGCTGCTACCGATA
LOC_Os07g34440
OsAffx.28747.1.S1_at--1041--251Chr07:20651968..20651992 (25 bp)
ATATGCCGTGAGCTATTTCGTGAAG
LOC_Os07g34440
OsAffx.28747.1.S1_at--482--7611Chr07:20652001..20652025 (25 bp)
GGGCAAGGTCTTGAATCCCCACAAG
LOC_Os07g34440
OsAffx.28747.1.S1_at--993--831Chr07:20652032..20652056 (25 bp)
ATGGAGAACCTCTTCAAGCGGCTAT
LOC_Os07g34440
OsAffx.28747.1.S1_at--741--391Chr07:20652055..20652079 (25 bp)
ATCACCATGGGCACCGGAACTATAC
LOC_Os07g34440
OsAffx.28747.1.S1_at--832--9931Chr07:20652077..20652101 (25 bp)
TACGTGCACGAGAGGGATGTCATTT
LOC_Os07g34440
OsAffx.28747.1.S1_at--912--7311Chr07:20652156..20652180 (25 bp)
GTGCAGTCGCTACGTCAGCAATGAC
LOC_Os07g34440
OsAffx.28747.1.S1_at--1056--1471Chr07:20652172..20652196 (25 bp)
AGCAATGACGTTGTCGTACCGCGAC
LOC_Os07g34440
OsAffx.28747.1.S1_at--301--6991Chr07:20652187..20652211 (25 bp)
GTACCGCGACATGTTCTTTTCCATG
LOC_Os07g34440
OsAffx.28747.1.S1_at--742--9531Chr07:20652241..20652265 (25 bp)
TCTACCATCGGCGAGGCTGTGGAAG
LOC_Os07g34440
Target Sequence 
AGCTGCATTGTTTGGCTCGCGGGACACTCGCTTGGTGCTTCCCTTGCGCTGGATGTGGGGCGTGCCATGATGGTGGAGCA
AGGCTACAACCTCCCGACCTTCCTCTTCAATCCGCCACAAGTGTCACCGACTCCAGCGATCGATGTGCTGCTACCGATAG
AGAAGGCACAAAAGGCAAAGAGGGACATATATGCCGTGAGCTATTTCGTGAAGGCAGGGTTGGGCAAGGTCTTGAATCCC
CACAAGGAGCGCATGGAGAACCTCTTCAAGCGGCTATCACCATGGGCACCGGAACTATACGTGCACGAGAGGGATGTCAT
TTGCAAGGGTTACATCGACTACTTCGAGCAACGGCAGCAGGTGCAGGAGCGCTTCCGTGCAGTCGCTACGTCAGCAATGA
CGTTGTCGTACCGCGACATGTTCTTTTCCATGTTCGGAATGGAGAAGGAGCAACCGCACCTTCTACCATCGGCGAGGCTG
TGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis