Browse Element(s) Details


OsAffx.28776.4.S1_at

Description tigr:9635.m03587
TID=OsAffx.28776.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3628011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36250Os.9780.1.S1_at11/117+21666526..21670201Peptide chain release factor 2, putative, expressed
LOC_Os07g36260Os.39859.1.S1_at11/117+21673087..21675683transposon protein, putative, Pong sub-class, expressed
LOC_Os07g36270NANA7+21679126..21683366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g36280OsAffx.28776.4.S1_at11/117+21690901..21693103F-box domain containing protein
LOC_Os07g36280OsAffx.28776.3.S1_x_at1/117+21690901..21693103F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_x_at11/117+21699926..21703973F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_at10/117+21699926..21703973F-box domain containing protein
LOC_Os07g36300OsAffx.28777.1.S1_x_at11/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.28777.2.S1_at9/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.8626.1.S1_at2/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.29958.2.S1_x_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.5606.1.S1_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36310OsAffx.28778.1.S1_x_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.2.S1_s_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.1.S1_at11/117+21716918..21717286hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28776.4.S1_at--169--2351Chr07:21691880..21691904 (25 bp)
AAAGCATAGAATTTAGTTTGTCAAT
LOC_Os07g36280
OsAffx.28776.4.S1_at--604--371Chr07:21691851..21691875 (25 bp)
ATCACAGCTAATTTGGTTTATAACT
LOC_Os07g36280
OsAffx.28776.4.S1_at--17--8591Chr07:21691433..21691862 (25 bp)
TGGTTTATAACTTTCATGATTCAGA
LOC_Os07g36280
OsAffx.28776.4.S1_at--726--2331Chr07:21691088..21691112 (25 bp)
AAAGATGTGCTCCATGTTGCATGTC
LOC_Os07g36280
OsAffx.28776.4.S1_at--283--6271Chr07:21691085..21691109 (25 bp)
GATGTGCTCCATGTTGCATGTCTAA
LOC_Os07g36280
OsAffx.28776.4.S1_at--514--3131Chr07:21691062..21691086 (25 bp)
AATTGCAATTGCCACGAACCATTAA
LOC_Os07g36280
OsAffx.28776.4.S1_at--571--5191Chr07:21691058..21691082 (25 bp)
GCAATTGCCACGAACCATTAAAATG
LOC_Os07g36280
OsAffx.28776.4.S1_at--135--671Chr07:21691028..21691052 (25 bp)
ATGAAGATATCTCGCTAGACTCCCT
LOC_Os07g36280
OsAffx.28776.4.S1_at--785--9311Chr07:21691008..21691032 (25 bp)
TCCCTTGAACAACTATGTGTCAAAC
LOC_Os07g36280
OsAffx.28776.4.S1_at--176--1611Chr07:21690956..21690980 (25 bp)
AGCTGATATACTTTATTATGCGGAA
LOC_Os07g36280
OsAffx.28776.4.S1_at--965--10391Chr07:21690941..21690965 (25 bp)
TTATGCGGAATTCAAAAGTGCTTAA
LOC_Os07g36280
Target Sequence 
AAAGCATAGAATTTAGTTTGTCAATATATATCACAGCTAATTTGGTTTATAACTTTCATGATTCAGAAGAGCAAGAGAGC
CTTATATACAGTGTCCAACTTCCTTACTATTCAAAGCTAGACCTCGGCGTGATAACAAAAGGGCATAAGTCGTACGGCTC
AAGTGTTGTACACTTCCTCAAGAGAAATAGCTCCATCAGAAACCTAACTCTTACACTACATCCATATCATCCTGAGGATA
AAAGATGTGCTCCATGTTGCATGTCTAATTGCAATTGCCACGAACCATTAAAATGGTGGGATGAAGATATCTCGCTAGAC
TCCCTTGAACAACTATGTGTCAAACACATCTGGGGTGAATGTGAAGGGAAGAAGCTGATATACTTTATTATGCGGAATTC
AAAAGTGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28776.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis