Browse Element(s) Details


OsAffx.28784.1.S1_at

Description tigr:9635.m03641
TID=OsAffx.28784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3679011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36750OsAffx.5550.1.S1_at11/117+22014108..22017490Cellulose synthase family protein, expressed
LOC_Os07g36760NANA7+22023107..22025397retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g36770NANA7+22027391..22033166retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g36780NANA7+22035466..22037940D-mannose binding lectin family protein, expressed
LOC_Os07g36790OsAffx.28784.1.S1_at11/117+22041765..22042016hypothetical protein
LOC_Os07g36800Os.17560.1.A1_at11/117+22044300..22046622Uncharacterised protein family containing protein, expressed
LOC_Os07g36810OsAffx.5551.1.S1_at11/117+22049643..22050308hypothetical protein
LOC_Os07g36820Os.38285.1.A1_at11/117+22054761..22058009Protein of unknown function, DUF614 containing protein, expressed
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28784.1.S1_at--478--9851Chr07:22041794..22041818 (25 bp)
TAAATTGGTCGATATTGCACTCTGC
LOC_Os07g36790
OsAffx.28784.1.S1_at--410--6411Chr07:22041831..22041855 (25 bp)
GATCTGGATCTGACAACAAAACTAG
LOC_Os07g36790
OsAffx.28784.1.S1_at--996--7951Chr07:22041836..22041860 (25 bp)
GGATCTGACAACAAAACTAGACCAA
LOC_Os07g36790
OsAffx.28784.1.S1_at--436--3291Chr07:22041867..22041891 (25 bp)
CAAAGATCTGACATAGCTTGGTACA
LOC_Os07g36790
OsAffx.28784.1.S1_at--1028--4911Chr07:22041882..22041906 (25 bp)
GCTTGGTACAAATTTCCTTTATCCT
LOC_Os07g36790
OsAffx.28784.1.S1_at--203--10351Chr07:22041899..22041923 (25 bp)
TTTATCCTTGTTCACCAATGGCAAG
LOC_Os07g36790
OsAffx.28784.1.S1_at--813--6751Chr07:22041908..22041932 (25 bp)
GTTCACCAATGGCAAGGGATTATCT
LOC_Os07g36790
OsAffx.28784.1.S1_at--381--1071Chr07:22041922..22041946 (25 bp)
AGGGATTATCTCTGTTGAAACTCAA
LOC_Os07g36790
OsAffx.28784.1.S1_at--604--2051Chr07:22041947..22041971 (25 bp)
ACTTGGCCAATGCACCCTTAGTATT
LOC_Os07g36790
OsAffx.28784.1.S1_at--3--3011Chr07:22041955..22041979 (25 bp)
AATGCACCCTTAGTATTCCCACTGG
LOC_Os07g36790
OsAffx.28784.1.S1_at--249--4311Chr07:22041962..22041986 (25 bp)
CCTTAGTATTCCCACTGGTTTTGAT
LOC_Os07g36790
Target Sequence 
TAAATTGGTCGATATTGCACTCTGCCGAGGAGTTGAGGATCTGGATCTGACAACAAAACTAGACCAAATATATCAAAGAT
CTGACATAGCTTGGTACAAATTTCCTTTATCCTTGTTCACCAATGGCAAGGGATTATCTCTGTTGAAACTCAAACTTGGC
CAATGCACCCTTAGTATTCCCACTGGTTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis