Browse Element(s) Details


OsAffx.28786.1.S1_at

Description tigr:9635.m03652
TID=OsAffx.28786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3689011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28786.1.S1_at--469--8911Chr07:22090191..22090215 (25 bp)
TGAGCATGCCTGTCTACACTACGAA
LOC_Os07g36890
OsAffx.28786.1.S1_at--60--4971Chr07:22090090..22090114 (25 bp)
GCATAGATTTTGACACTTACGAGTT
LOC_Os07g36890
OsAffx.28786.1.S1_at--322--6211Chr07:22089953..22089977 (25 bp)
GAGGCCTTCCCACAGCATTTAAGAA
LOC_Os07g36890
OsAffx.28786.1.S1_at--199--7351Chr07:22089906..22089930 (25 bp)
GTGACAATGCACTCTAACGACGACC
LOC_Os07g36890
OsAffx.28786.1.S1_at--442--2591Chr07:22089891..22089915 (25 bp)
AACGACGACCTTGCTTGGGCAACTA
LOC_Os07g36890
OsAffx.28786.1.S1_at--517--9371Chr07:22089468..22089492 (25 bp)
TCGAGCACCATCGTCTGAGGCAGGT
LOC_Os07g36890
OsAffx.28786.1.S1_at--100--1391Chr07:22089366..22089390 (25 bp)
AGACCATGTCGTTTTTCCGTGGATT
LOC_Os07g36890
OsAffx.28786.1.S1_at--453--7491Chr07:22089348..22089372 (25 bp)
GTGGATTTGTTCATAACCCTCCGAA
LOC_Os07g36890
OsAffx.28786.1.S1_at--83--9811Chr07:22089335..22089359 (25 bp)
TAACCCTCCGAATTGGATCACTCAG
LOC_Os07g36890
OsAffx.28786.1.S1_at--947--2651Chr07:22089303..22089327 (25 bp)
AAGCCTACCATGACTGGAGCACCGG
LOC_Os07g36890
OsAffx.28786.1.S1_at--298--9691Chr07:22089264..22089288 (25 bp)
TCACTCGTCGGCTCGAAGCTTGCAA
LOC_Os07g36890
Target Sequence 
TGAGCATGCCTGTCTACACTACGAAGATAGCAGGGATGGTGAATCTGTCAAGTACATTTTAGGAAAGTTGTCTCAAGACT
TTCCCCTACTTACAAGCTTAAGCATAGATTTTGACACTTACGAGTTGAAGAATCCAGTAATTCCTGGAGGCCTTCCCACA
GCATTTAAGAACCTGAGAAGTCTCATGCTGAGAGTGACAATGCACTCTAACGACGACCTTGCTTGGGCAACTATGCTGTT
GGAGGTGGCACCTGCCCTCGAAAGTTTTCAGATAGAACTCATTTCCAACAAGAAACGAGAGCACCCAGGCGGCGTGCTGT
GGGAGCCATCAGACTTCGAGCACCATCGTCTGAGGCAGGTGAAGTTCTACCGCTTCAGGATGAGGCAGGGTGACGTTGCG
TTGGCAGGGTTGCTTCTGGCGAGAGCCCCGTTGCTGCAGACCATGTCGTTTTTCCGTGGATTTGTTCATAACCCTCCGAA
TTGGATCACTCAGTATGTGGAAGCCTACCATGACTGGAGCACCGGGCAGCAATCTGCCATCACTCGTCGGCTCGAAGCTT
GCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis