Browse Element(s) Details


OsAffx.2879.1.S1_at

Description tigr:9630.m03472
TID=OsAffx.2879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3637011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36350Os.54148.1.S1_at11/112+21944016..21945903expressed protein
LOC_Os02g36360Os.5755.1.S1_at9/112+21950720..21954252Zinc finger, C2H2 type family protein, expressed
LOC_Os02g36370OsAffx.2879.1.S1_at11/112+21961946..21964357hypothetical protein
LOC_Os02g36380Os.4180.1.S1_at10/112+21970640..21974426Cryptochrome 1 apoprotein, putative, expressed
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2879.1.S1_at--509--2431Chr02:21964265..21964289 (25 bp)
AAAACCAGGCCACGTGATGATGCGG
LOC_Os02g36370
OsAffx.2879.1.S1_at--158--3111Chr02:21964190..21964214 (25 bp)
AATTTGGACGCCTCGACTGTGGCAC
LOC_Os02g36370
OsAffx.2879.1.S1_at--452--7571Chr02:21963790..21964165 (25 bp)
GGGCGTGCGTCTATGGTGACCTACA
LOC_Os02g36370
OsAffx.2879.1.S1_at--33--6871Chr02:21963757..21963781 (25 bp)
GTATTTGGCCCTAACAACGGTGATT
LOC_Os02g36370
OsAffx.2879.1.S1_at--737--10251Chr02:21962167..21962191 (25 bp)
TTTGGGCCGACGAACACGAGCATCT
LOC_Os02g36370
OsAffx.2879.1.S1_at--655--5291Chr02:21962123..21962147 (25 bp)
GAAGGCGCATGGAACCTGGTGCTCA
LOC_Os02g36370
OsAffx.2879.1.S1_at--301--2631Chr02:21962111..21962135 (25 bp)
AACCTGGTGCTCATTTGCGATGGGC
LOC_Os02g36370
OsAffx.2879.1.S1_at--1086--5871Chr02:21962073..21962097 (25 bp)
GAGCGAAGTCGACGATGACCCAATT
LOC_Os02g36370
OsAffx.2879.1.S1_at--1150--1791Chr02:21962056..21962080 (25 bp)
ACCCAATTGGGCTTCTTGCTGAAAG
LOC_Os02g36370
OsAffx.2879.1.S1_at--115--4751Chr02:21962039..21962063 (25 bp)
GCTGAAAGGATTTGGCCCTCTACCT
LOC_Os02g36370
OsAffx.2879.1.S1_at--1117--3051Chr02:21962001..21962025 (25 bp)
AATCTCTAGCAGTGTCTCATTGTTT
LOC_Os02g36370
Target Sequence 
AAAACCAGGCCACGTGATGATGCGGCGACTGATGGAAAGTTTGCTTGAGCTGGACTGGGGCGGGGCGCCACGGTCAATTT
GGACGCCTCGACTGTGGCACGAACGAAGGATGCGCCACTCCGGCGGGCGTGCGTCTATGGTGACCTACAGTGTGATAGTA
TTTGGCCCTAACAACGGTGATTCGCCACCGCCCTTCTCCTTCTCCGTGCGTGCTGCCTTTGGGCCGACGAACACGAGCAT
CTTCGTGGAGAAGACGGAGAAGAAGGCGCATGGAACCTGGTGCTCATTTGCGATGGGCGGGAGCCAGTCGCGAGCGAAGT
CGACGATGACCCAATTGGGCTTCTTGCTGAAAGGATTTGGCCCTCTACCTCCACCACCCTCCCAATCTCTAGCAGTGTCT
CATTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis