Browse Element(s) Details


OsAffx.28791.2.A1_s_at

Description tigr:9635.m03679
TID=OsAffx.28791.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3715011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37100Os.8375.1.S1_at11/117+22229333..22232900equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37110Os.53971.1.S1_at11/117+22235127..22238625equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37120NANA7+22240025..22241838retrotransposon protein, putative, LINE subclass
LOC_Os07g37130Os.52135.1.S1_at11/117+22242231..22244796equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37140Os.9008.1.S1_at11/117+22245963..22251138expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_s_at11/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_at10/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.7080.1.S1_x_at1/117+22252083..22255035expressed protein
LOC_Os07g37164NANA7+22262954..22263845NA
LOC_Os07g37180Os.19619.1.S1_at11/117+22266055..22271922ABC1 family protein, putative, expressed
LOC_Os07g37190NANA7+22279482..22282709transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28791.2.A1_s_at--126--7711Chr07:22253133..22253157 (25 bp)
GGGTCGGCGCATGGCAAGCAGAGGG
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--1107--5971Chr07:22253158..22253182 (25 bp)
GAGAAATTCGACATATGAGGCCTTA
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--1109--3911Chr07:22254690..22254714 (25 bp)
CTGGCGCGCTCGAACTGCAGCGAGT
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--467--4571Chr07:22254693..22254717 (25 bp)
GCGCGCTCGAACTGCAGCGAGTCGA
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--300--1951Chr07:22254717..22254741 (25 bp)
ACGGCGAGCGGCATGTTCTCCTGGT
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--429--1611Chr07:22254723..22254747 (25 bp)
AGCGGCATGTTCTCCTGGTCCGGGC
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--289--7571Chr07:22254789..22254813 (25 bp)
GGGCGCGCGCTGTAGAGCATGGCGC
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--957--8731Chr07:22254838..22254862 (25 bp)
TGTACACCGTCTTGTTCTTGGCCAG
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--43--1791Chr07:22254843..22254867 (25 bp)
ACCGTCTTGTTCTTGGCCAGCAGCC
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--858--1691Chr07:22254963..22254987 (25 bp)
ACCACAAGAACACAGGTGAGACGAA
LOC_Os07g37150
OsAffx.28791.2.A1_s_at--1064--7371Chr07:22254978..22255002 (25 bp)
GTGAGACGAAGAAGAAACTGCATTT
LOC_Os07g37150
Target Sequence 
GGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTACTGCTGCGATGGCGA
TGGCACGATGATGACCGAGGCAAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGC
CGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGC
GGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAG
CATGGCGCGCAGCACGGCGGACACGGTGGGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCT
GGCAGTCGCGCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCAGCTGCACCACC
ACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28791.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis