Browse Element(s) Details


OsAffx.28876.1.S1_at

Description tigr:9635.m04266
TID=OsAffx.28876.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4259011/11F-box protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42560NANA7+25464356..25466031hypothetical protein
LOC_Os07g42570OsAffx.28874.1.S1_x_at11/117+25467856..25468425Dirigent-like protein
LOC_Os07g42580OsAffx.28875.1.S1_at11/117+25478899..25479467hypothetical protein
LOC_Os07g42590OsAffx.28876.1.S1_at11/117+25486584..25488038F-box protein, putative, expressed
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28876.1.S1_at--826--1851Chr07:25487467..25487491 (25 bp)
ACGACGAGACGGTCTACTTCCTGAG
LOC_Os07g42590
OsAffx.28876.1.S1_at--963--8871Chr07:25487506..25487530 (25 bp)
TGATGGCGACCAACATGCAGCGGAG
LOC_Os07g42590
OsAffx.28876.1.S1_at--325--871Chr07:25487508..25487532 (25 bp)
ATGGCGACCAACATGCAGCGGAGCG
LOC_Os07g42590
OsAffx.28876.1.S1_at--851--4671Chr07:25487610..25487634 (25 bp)
GCGGTGGTGGCCTGCGAACTGTCGC
LOC_Os07g42590
OsAffx.28876.1.S1_at--904--7971Chr07:25487659..25487683 (25 bp)
GGATCCTGCCCGTGTACTTCGAGTA
LOC_Os07g42590
OsAffx.28876.1.S1_at--527--4451Chr07:25487715..25487739 (25 bp)
GCCTACGTGGTGGTCCTCTCGGAGC
LOC_Os07g42590
OsAffx.28876.1.S1_at--168--1911Chr07:25487719..25487743 (25 bp)
ACGTGGTGGTCCTCTCGGAGCTCCT
LOC_Os07g42590
OsAffx.28876.1.S1_at--1122--5811Chr07:25487871..25487895 (25 bp)
GACCGCGTCATGGTCTGCGTCAGCT
LOC_Os07g42590
OsAffx.28876.1.S1_at--702--3651Chr07:25487915..25487939 (25 bp)
CTTCATGTGCGACGTGCCGACCAAC
LOC_Os07g42590
OsAffx.28876.1.S1_at--952--1891Chr07:25487926..25487950 (25 bp)
ACGTGCCGACCAACCGCTGGGAGGA
LOC_Os07g42590
OsAffx.28876.1.S1_at--693--4611Chr07:25487977..25488001 (25 bp)
GCGAGCCCATGGACTTCGTGGCCGC
LOC_Os07g42590
Target Sequence 
ACGACGAGACGGTCTACTTCCTGAGCAAGTCCGGCGACGTGATGGCGACCAACATGCAGCGGAGCGCGTCGAGGCAGTAC
TCGTCCGCCGTCACGTGCGGCGACGGCGGCGAGGCCGTGGCCTACTTCCTGAGCAACTCCGGCGCGGTGGTGGCCTGCGA
ACTGTCGCGCCGCGCCTTCGCCGAGCTCCCCCGGATCCTGCCCGTGTACTTCGAGTACTCCATCGACGTCGTGGCGTGCG
GCGGCCGCGCCTACGTGGTGGTCCTCTCGGAGCTCCTCGGCACGGCCAGCCTGCGCCTGTGGGAGTTCGCCGGCGGCGCG
TGGCGGCAGGTGGCCGCGATGCCGCCGGCCATGTCGCACGCGTTCCACGGCAAGAAGGCCGACGTCAACTGCGTCGGGCA
CGGCGACCGCGTCATGGTCTGCGTCAGCTCCGGCGAGGCCAACGGCTGCTTCATGTGCGACGTGCCGACCAACCGCTGGG
AGGAGCTCCCGCCGTGCGCCGGCGCCGGCGGCGAGCCCATGGACTTCGTGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis