Browse Element(s) Details


OsAffx.28918.7.S1_x_at

Description tigr:9635.m04572
TID=OsAffx.28918.7
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4549011/11expressed protein
LOC_Os07g454803/11hypothetical protein
LOC_Os07g455102/11hypothetical protein
LOC_Os07g454601/11hypothetical protein
LOC_Os07g455601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45460OsAffx.28918.2.S1_x_at11/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.7.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.5.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.22536.1.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45470NANA7+27125684..27127590hypothetical protein
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45490OsAffx.28918.7.S1_x_at11/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.28918.5.S1_x_at3/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.22536.1.S1_x_at1/117+27139551..27145247expressed protein
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45540OsAffx.16728.1.S1_at3/117+27164172..27164904hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28918.7.S1_x_at--975--8912Chr07:27151711..27151735 (25 bp)
TGAGCTCAGCAACTCAGACCTGAAG
LOC_Os07g45510
OsAffx.28918.7.S1_x_at--827--8172Chr07:27142592..27142616 (25 bp)
GGAACTGTCTTACATCTTACGAGAG
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--794--1051Chr07:27142757..27142781 (25 bp)
AGGGAGAACCGACCTGCAGTTTGCA
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--981--7053Chr07:27143121..27143145 (25 bp)
GTCATTCCTGAAGACTTTGCCCGAG
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--453--4893Chr07:27143198..27143222 (25 bp)
GCTTAATGCACATATGAGACCCAGT
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--746--1131Chr07:27143220..27143244 (25 bp)
AGTGCCCATTGTCCTGGCATCAGGA
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--987--6131Chr07:27143243..27143267 (25 bp)
GAGGGTAATTGTTCAGCATGCCATA
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--1106--2053Chr07:27143269..27143293 (25 bp)
ACTTGATGGAGTTCAATTCTCGCTA
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--1134--10572Chr07:27143285..27143309 (25 bp)
TTCTCGCTATGCAAATGATTTCCAC
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--520--2951Chr07:27143336..27143360 (25 bp)
AATGGTAGAACGTACGCCCTCGAGA
LOC_Os07g45490
OsAffx.28918.7.S1_x_at--246--5991Chr07:27143386..27143410 (25 bp)
GAGACACAGGACTCATGGAGCACAA
LOC_Os07g45490
Target Sequence 
TGAGCTCAGCAACTCAGACCTGAAGGAACTGTCTTACATCTTACGAGAGGGAGAACCGACCTGCAGTTTGCACATTGTTT
CTCAAAGCATACACATATGTGCTCTTAATATTGATAGCATTGTGCTGGAACGAACAATGGATGCAGAAGGGGCAGAACTA
GAGGTCTTTATTGGCCTTAGTTCACAAATATGTAAAGTCATTCCTGAAGACTTTGCCCGAGAAGTAGAGCATGGTCAAAT
TAAGGAAAAATTCGTAAAGAGGCTTGTCGATGTGCTTAATGCACATATGAGACCCAGTGCCCATTGTCCTGGCATCAGGA
GGGTAATTGTTCAGCATGCCATATACTTGATGGAGTTCAATTCTCGCTATGCAAATGATTTCCACAAATGCTGGATGGTG
GAAACACTATCAATGGTAGAACGTACGCCCTCGAGATCTGAAAACTACAAGTTGTTTTCAGGAGACACAGGACTCATGGA
GCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28918.7.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis