Browse Element(s) Details


OsAffx.29007.1.S1_at

Description tigr:9636.m00227
TID=OsAffx.29007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lectin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0319011/11Legume lectins beta domain containing protein
LOC_Os08g030701/11Legume lectins beta domain containing protein, expressed
LOC_Os08g030201/11Legume lectins beta domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03150OsAffx.29006.2.S1_at11/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03150Os.50872.1.S1_at4/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03160OsAffx.29006.3.S1_x_at11/118+1447811..1450004lectin protein kinase, putative
LOC_Os08g03170Os.53070.1.S1_at11/118+1460003..1461829Protein kinase domain containing protein, expressed
LOC_Os08g03180Os.53253.1.S1_at11/118+1462078..1466880retrotransposon protein, putative, unclassified, expressed
LOC_Os08g03190OsAffx.29007.1.S1_at11/118+1466896..1467375Legume lectins beta domain containing protein
LOC_Os08g03200OsAffx.29006.1.S1_at1/118+1471193..1478565retrotransposon protein, putative, unclassified
LOC_Os08g03210OsAffx.20354.1.S1_at2/118+1484061..1486989retrotransposon protein, putative, unclassified
LOC_Os08g03220OsAffx.1646.1.S1_x_at1/118+1487320..1493442retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29007.1.S1_at--170--4933Chr08:1467302..1467326 (25 bp)
GCTTGCTCGTCATGCCTAGCGTCGT
LOC_Os08g03190
OsAffx.29007.1.S1_at--78--10792Chr08:1466994..1467018 (25 bp)
TTGTTGGCGAAGAACACCAATCGAA
LOC_Os08g03190
OsAffx.29007.1.S1_at--874--5372Chr08:1466986..1467010 (25 bp)
GAAGAACACCAATCGAACACCTTGT
LOC_Os08g03190
OsAffx.29007.1.S1_at--537--3372Chr08:1466969..1466993 (25 bp)
CACCTTGTGGGCGTCCTGTAGCTAT
LOC_Os08g03190
OsAffx.29007.1.S1_at--651--10812Chr08:1466965..1466989 (25 bp)
TTGTGGGCGTCCTGTAGCTATCCGG
LOC_Os08g03190
OsAffx.29007.1.S1_at--123--7492Chr08:1466963..1466987 (25 bp)
GTGGGCGTCCTGTAGCTATCCGGCA
LOC_Os08g03190
OsAffx.29007.1.S1_at--547--7232Chr08:1466957..1466981 (25 bp)
GTCCTGTAGCTATCCGGCACAGCAG
LOC_Os08g03190
OsAffx.29007.1.S1_at--1051--6952Chr08:1466952..1466976 (25 bp)
GTAGCTATCCGGCACAGCAGACTGA
LOC_Os08g03190
OsAffx.29007.1.S1_at--283--1572Chr08:1466950..1466974 (25 bp)
AGCTATCCGGCACAGCAGACTGAAG
LOC_Os08g03190
OsAffx.29007.1.S1_at--1121--10132Chr08:1466947..1466971 (25 bp)
TATCCGGCACAGCAGACTGAAGAAA
LOC_Os08g03190
OsAffx.29007.1.S1_at--898--8232Chr08:1466942..1466966 (25 bp)
GGCACAGCAGACTGAAGAAACTTTC
LOC_Os08g03190
Target Sequence 
GCTTGCTCGTCATGCCTAGCGTCGTCGCTACCACTACTGTATCTTTCAACTACTCCAGCTTCAGCAACGCGAGCAAGAAC
ATCACCCTCCAGGGCAGCGCGGCGCTCGCCGGCGCCGCCGCCGAATGGATCGAGCTCACCAAAGGCAAAGGGAACAACCT
GTCGAGCGGCGGCACCATGGGCCGGATGGTGTACACGCCGCCGGTGCAGCTCTGGGACGCCGCCACCGGCGAGGTTGCCA
GCTTCACCACGCGCTTCTCCTTCAACATCACCCCGAAAAACAAGAGCAACAAGGGCGACGGGATGACCTTGTTGGCGAAG
AACACCAATCGAACACCTTGTGGGCGTCCTGTAGCTATCCGGCACAGCAGACTGAAGAAACTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis