Browse Element(s) Details


OsAffx.29025.1.S1_at

Description tigr:9636.m00359
TID=OsAffx.29025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=mavicyanin. (vegetable marrow, summer squash
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0436011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04310Os.14191.1.S1_at11/118+2109339..2110694Plastocyanin-like domain containing protein, expressed
LOC_Os08g04320OsAffx.25936.1.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.7.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.2.S1_x_at4/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.5.S1_x_at1/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04330NANA8+2115691..2118666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04340Os.23207.1.S1_at11/118+2123269..2124255Plastocyanin-like domain containing protein, expressed
LOC_Os08g04350NANA8+2127337..2127962Plastocyanin-like domain containing protein, expressed
LOC_Os08g04360OsAffx.29025.1.S1_at11/118+2131189..2131737Plastocyanin-like domain containing protein, expressed
LOC_Os08g04370OsAffx.29026.1.S1_at11/118+2134038..2134610Plastocyanin-like domain containing protein
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29025.1.S1_at--675--4231Chr08:2131308..2131332 (25 bp)
CCGTGTCGGCGACCAGCTTGTGTTC
LOC_Os08g04360
OsAffx.29025.1.S1_at--281--2951Chr08:2131372..2131396 (25 bp)
AAGGCTGGCTACGACTCCTGCTCGA
LOC_Os08g04360
OsAffx.29025.1.S1_at--396--2171Chr08:2131433..2131457 (25 bp)
ACACCGTGCCATTGACAGCTACCGG
LOC_Os08g04360
OsAffx.29025.1.S1_at--987--3571Chr08:2131442..2131466 (25 bp)
CATTGACAGCTACCGGCACCCGATA
LOC_Os08g04360
OsAffx.29025.1.S1_at--745--5091Chr08:2131457..2131481 (25 bp)
GCACCCGATACTTCATGTGCGGCTT
LOC_Os08g04360
OsAffx.29025.1.S1_at--437--1771Chr08:2131540..2131564 (25 bp)
ACCGGCGGTAGTGGCACTGCACTGT
LOC_Os08g04360
OsAffx.29025.1.S1_at--542--1091Chr08:2131549..2131573 (25 bp)
AGTGGCACTGCACTGTCGCCAATGG
LOC_Os08g04360
OsAffx.29025.1.S1_at--293--5451Chr08:2131608..2131632 (25 bp)
GAACGCGATGCCACCTATGGCTGGT
LOC_Os08g04360
OsAffx.29025.1.S1_at--320--3371Chr08:2131619..2131643 (25 bp)
CACCTATGGCTGGTGGTCGGCCTGT
LOC_Os08g04360
OsAffx.29025.1.S1_at--345--7491Chr08:2131631..2131655 (25 bp)
GTGGTCGGCCTGTGTCTCCATCGAG
LOC_Os08g04360
OsAffx.29025.1.S1_at--611--4611Chr08:2131660..2131684 (25 bp)
GCGAGCAAGTCCACTGGTGTTGCAT
LOC_Os08g04360
Target Sequence 
CCGTGTCGGCGACCAGCTTGTGTTCAAGTACTCGCCGGCGGCGCACGACGTCGTGGAGGTGACCAAGGCTGGCTACGACT
CCTGCTCGAGCTCCGGCCCCGTCGCCACCTTCAACTCCGGCGATGACACCGTGCCATTGACAGCTACCGGCACCCGATAC
TTCATGTGCGGCTTCCCTGGCCATTGCGCCGCCGGGATGAAGATCGCAGTCAAGGTCGAGGCCGCCACTGCCACCGGCGG
TAGTGGCACTGCACTGTCGCCAATGGCGCCTCGTCCGCGCACGCCTACAGCAATGGCACCGAACGCGATGCCACCTATGG
CTGGTGGTCGGCCTGTGTCTCCATCGAGCTCGGCGAGCAAGTCCACTGGTGTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis