Browse Element(s) Details


OsAffx.29031.2.S1_at

Description tigr:9636.m00382
TID=OsAffx.29031.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0457011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04540Os.27876.1.S1_x_at11/118+2249663..2251528Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04550OsAffx.29030.1.S1_at11/118+2259647..2260465hypothetical protein
LOC_Os08g04560OsAffx.5702.1.S1_s_at11/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04560Os.27876.1.S1_x_at3/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04570OsAffx.29031.2.S1_at11/118+2274231..2276255hypothetical protein
LOC_Os08g04580OsAffx.29031.1.S1_at11/118+2277339..2279865csAtPR5, putative, expressed
LOC_Os08g04590OsAffx.16827.1.S1_at11/118+2283046..2287271csAtPR5, putative
LOC_Os08g04600NANA8+2288082..2288480hypothetical protein
LOC_Os08g04610OsAffx.5703.1.S1_at11/118+2290348..2291032hypothetical protein
LOC_Os08g04620Os.27768.1.S1_at11/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04620Os.34006.1.S1_x_at1/118+2299465..2302161Membrane associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29031.2.S1_at--134--8151Chr08:2274771..2274795 (25 bp)
GGACAAACACTTGAGCTACCTAGCT
LOC_Os08g04570
OsAffx.29031.2.S1_at--965--7271Chr08:2274746..2274770 (25 bp)
GTGCCACTCTTATGTCATGGTAAGC
LOC_Os08g04570
OsAffx.29031.2.S1_at--744--1631Chr08:2274724..2274748 (25 bp)
AGCGTTATTCACGTATGCTGCTTAA
LOC_Os08g04570
OsAffx.29031.2.S1_at--1016--4731Chr08:2274708..2274732 (25 bp)
GCTGCTTAATTCTGGTTCTTACACA
LOC_Os08g04570
OsAffx.29031.2.S1_at--1150--8551Chr08:2274634..2274658 (25 bp)
TGGAGGCCACAATATTCGTGCGAGT
LOC_Os08g04570
OsAffx.29031.2.S1_at--120--10631Chr08:2274620..2274644 (25 bp)
TTCGTGCGAGTCATTTGTGGGTCAT
LOC_Os08g04570
OsAffx.29031.2.S1_at--341--4431Chr08:2274566..2274590 (25 bp)
GCCTTTACCACTGGTGTTCGTTGGA
LOC_Os08g04570
OsAffx.29031.2.S1_at--817--7911Chr08:2274540..2274564 (25 bp)
GGATTTGGCCCGTGAAAAGAACATT
LOC_Os08g04570
OsAffx.29031.2.S1_at--1003--5171Chr08:2274439..2274463 (25 bp)
GCAAGATTGTGCTTTCACGGTGTGT
LOC_Os08g04570
OsAffx.29031.2.S1_at--731--5391Chr08:2274344..2274368 (25 bp)
GAAGCAGAGATGGTTTTCACAGCAT
LOC_Os08g04570
OsAffx.29031.2.S1_at--361--9691Chr08:2274328..2274352 (25 bp)
TCACAGCATTGAAAGCCGGTTTAAG
LOC_Os08g04570
Target Sequence 
GGACAAACACTTGAGCTACCTAGCTGTGCCACTCTTATGTCATGGTAAGCGTTATTCACGTATGCTGCTTAATTCTGGTT
CTTACACAAGCAAGCTAAGCACACTGGAGTTCAGACTTGGCTACATCGTGTCATCTGTGGAGGCCACAATATTCGTGCGA
GTCATTTGTGGGTCATGGCCTGATGGTTTTCATGGTCAATTTGCTGCCTTTACCACTGGTGTTCGTTGGAAGGATTTGGC
CCGTGAAAAGAACATTGCCAGTGTTGATGATGAGAGAATTCTCCTGCTTGATTCTAGAGGTGATCAGAAAGTAGTTGTTA
CTGGTGATGATGGCAAGATTGTGCTTTCACGGTGTGTTGTTTCTGTTGAAGATAAGGGCGAGCTGAAAGTTCATGTCAGG
GCATGGAAAGTTGATGACAGTGTTGTGGAAGCAGAGATGGTTTTCACAGCATTGAAAGCCGGTTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29031.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis