Browse Element(s) Details


OsAffx.29054.1.S1_at

Description tigr:9636.m00512
TID=OsAffx.29054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0582011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed
LOC_Os08g05810Os.54300.1.S1_at5/118+3107628..3110952DEAD/DEAH box helicase, putative
LOC_Os08g05820OsAffx.29054.1.S1_at11/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05820Os.23535.1.A1_at9/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein

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Gene Ontology Classification
GO idTypeName
GO:0009932biological_processcell tip growth
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29054.1.S1_at--1022--371Chr08:3115118..3115142 (25 bp)
ATCACTCAGACCTTCGTTCTCAAGA
LOC_Os08g05820
OsAffx.29054.1.S1_at--690--6711Chr08:3115103..3115127 (25 bp)
GTTCTCAAGAACGAGTTACCTTTGC
LOC_Os08g05820
OsAffx.29054.1.S1_at--569--5451Chr08:3115095..3115119 (25 bp)
GAACGAGTTACCTTTGCTCATCAAT
LOC_Os08g05820
OsAffx.29054.1.S1_at--688--1211Chr08:3115090..3115114 (25 bp)
AGTTACCTTTGCTCATCAATGGAAA
LOC_Os08g05820
OsAffx.29054.1.S1_at--475--9591Chr08:3115078..3115102 (25 bp)
TCATCAATGGAAAGCGTCGAAGGAC
LOC_Os08g05820
OsAffx.29054.1.S1_at--81--9231Chr08:3115032..3115056 (25 bp)
TCCACCAGAGACTCCACTGAGGCTT
LOC_Os08g05820
OsAffx.29054.1.S1_at--184--6211Chr08:3115014..3115038 (25 bp)
GAGGCTTGCTGATCTCCACAACTTG
LOC_Os08g05820
OsAffx.29054.1.S1_at--784--10711Chr08:3115009..3115033 (25 bp)
TTGCTGATCTCCACAACTTGACTGG
LOC_Os08g05820
OsAffx.29054.1.S1_at--756--6411Chr08:3115004..3115028 (25 bp)
GATCTCCACAACTTGACTGGAGTGT
LOC_Os08g05820
OsAffx.29054.1.S1_at--528--8031Chr08:3114986..3115010 (25 bp)
GGAGTGTACAAGACTGACTTCCCCA
LOC_Os08g05820
OsAffx.29054.1.S1_at--606--5691Chr08:3114971..3114995 (25 bp)
GACTTCCCCACAATGCCAGGCAATG
LOC_Os08g05820
Target Sequence 
ATCACTCAGACCTTCGTTCTCAAGAACGAGTTACCTTTGCTCATCAATGGAAAGCGTCGAAGGACGATAAACGGGGTCTC
ATACTCTCCACCAGAGACTCCACTGAGGCTTGCTGATCTCCACAACTTGACTGGAGTGTACAAGACTGACTTCCCCACAA
TGCCAGGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis