Browse Element(s) Details


OsAffx.5721.1.S1_s_at

Description tigr:9636.m00516
TID=OsAffx.5721.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sm protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0585011/11Sm protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05820OsAffx.29054.1.S1_at11/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05820Os.23535.1.A1_at9/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05890Os.18138.1.S1_at10/118+3165261..3169089MSP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5721.1.S1_s_at--759--9711Chr08:3140794..3140818 (25 bp)
TCAAGAACGACCTGGCCATCCGCGG
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--612--4011Chr08:3140831..3140855 (25 bp)
CGTCGACCAATACCTCAACATCAAG
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--676--5851Chr08:3140835..3140859 (25 bp)
GACCAATACCTCAACATCAAGCTCG
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--980--3091Chr08:3140839..3140863 (25 bp)
AATACCTCAACATCAAGCTCGAGAA
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--152--9711Chr08:3140845..3140869 (25 bp)
TCAACATCAAGCTCGAGAACACTCG
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--834--3551Chr08:3140849..3140873 (25 bp)
CATCAAGCTCGAGAACACTCGGGTT
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--131--2691Chr08:3140853..3140877 (25 bp)
AAGCTCGAGAACACTCGGGTTGTCG
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--967--5971Chr08:3140859..3140883 (25 bp)
GAGAACACTCGGGTTGTCGACCAGG
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--651--5491Chr08:3140861..3140885 (25 bp)
GAACACTCGGGTTGTCGACCAGGAC
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--712--2171Chr08:3140863..3140887 (25 bp)
ACACTCGGGTTGTCGACCAGGACAA
LOC_Os08g05850
OsAffx.5721.1.S1_s_at--327--3791Chr08:3140866..3140890 (25 bp)
CTCGGGTTGTCGACCAGGACAAGTA
LOC_Os08g05850
Target Sequence 
TCAAGAACGACCTGGCCATCCGCGGCACGCTCCACTCCGTCGACCAATACCTCAACATCAAGCTCGAGAACACTCGGGTT
GTCGACCAGGACAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5721.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis