Browse Element(s) Details


OsAffx.29055.1.S1_at

Description tigr:9636.m00517
TID=OsAffx.29055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0586011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05890Os.18138.1.S1_at10/118+3165261..3169089MSP domain containing protein, expressed
LOC_Os08g05900OsAffx.29056.1.S1_at11/118+3169173..3169640hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29055.1.S1_at--233--7551Chr08:3145395..3145419 (25 bp)
GTGGCGATGGCCTCGATACGTCCGC
LOC_Os08g05860
OsAffx.29055.1.S1_at--61--8431Chr08:3145387..3145411 (25 bp)
GGCCTCGATACGTCCGCAACAACAG
LOC_Os08g05860
OsAffx.29055.1.S1_at--859--2371Chr08:3145344..3145368 (25 bp)
AAACCCTCGTCCCATTTGCAGTATG
LOC_Os08g05860
OsAffx.29055.1.S1_at--948--3991Chr08:3145337..3145361 (25 bp)
CGTCCCATTTGCAGTATGTTGTCAT
LOC_Os08g05860
OsAffx.29055.1.S1_at--56--6931Chr08:3145324..3145348 (25 bp)
GTATGTTGTCATCGTCTTGTGGATC
LOC_Os08g05860
OsAffx.29055.1.S1_at--149--511Chr08:3145314..3145338 (25 bp)
ATCGTCTTGTGGATCTCGCCCTTGT
LOC_Os08g05860
OsAffx.29055.1.S1_at--385--4551Chr08:3145226..3145321 (25 bp)
GCCCTTGTCGTCGAGTGTGAGCGAT
LOC_Os08g05860
OsAffx.29055.1.S1_at--792--6251Chr08:3145191..3145215 (25 bp)
GATGGGTCAATGGAGCTTGCTGGGC
LOC_Os08g05860
OsAffx.29055.1.S1_at--940--4171Chr08:3145147..3145171 (25 bp)
CCCACCTCGATCTGCACTGAAGAAG
LOC_Os08g05860
OsAffx.29055.1.S1_at--566--3331Chr08:3145133..3145157 (25 bp)
CACTGAAGAAGCACGTCGGCTCGAT
LOC_Os08g05860
OsAffx.29055.1.S1_at--242--1791Chr08:3145067..3145091 (25 bp)
ACCGTCCCTGACCAATGTTGTTGTG
LOC_Os08g05860
Target Sequence 
GTGGCGATGGCCTCGATACGTCCGCAACAACAGCCCGACGGTGGCCGCCTCAAACCCTCGTCCCATTTGCAGTATGTTGT
CATCGTCTTGTGGATCTCGCCCTTGTCGTCGAGTGTGAGCGATGGAGATCAGGGATGGGTCAATGGAGCTTGCTGGGCTG
CCGCCGGCAACCTCTCGCCCACCTCGATCTGCACTGAAGAAGCACGTCGGCTCGATGGGGAAGGCGGCAGGGTCGAAGAA
GCTCGCCGACTCATCCTACCGTCCCTGACCAATGTTGTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis