Browse Element(s) Details


OsAffx.29056.1.S1_at

Description tigr:9636.m00521
TID=OsAffx.29056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0590011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05890Os.18138.1.S1_at10/118+3165261..3169089MSP domain containing protein, expressed
LOC_Os08g05900OsAffx.29056.1.S1_at11/118+3169173..3169640hypothetical protein
LOC_Os08g05910Os.7458.1.S1_a_at11/118+3175990..3184094Nitrate/chlorate transporter, putative, expressed
LOC_Os08g05920Os.45902.1.A1_x_at4/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920Os.56372.1.S1_at1/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920OsAffx.10222.1.S1_x_at1/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05930Os.10703.2.S1_x_at1/118+3193079..3198727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29056.1.S1_at--135--2811Chr08:3169541..3169565 (25 bp)
AAGATGACAGGAGTTGGCAGCGGCG
LOC_Os08g05900
OsAffx.29056.1.S1_at--547--5751Chr08:3169467..3169491 (25 bp)
GACGGTGATAGCCACGGCGTCGGAG
LOC_Os08g05900
OsAffx.29056.1.S1_at--926--1891Chr08:3169409..3169433 (25 bp)
ACGTCTCCGGCTGTGTGGCACTGGC
LOC_Os08g05900
OsAffx.29056.1.S1_at--115--8671Chr08:3169396..3169420 (25 bp)
TGTGGCACTGGCACGTGCTGAGTCT
LOC_Os08g05900
OsAffx.29056.1.S1_at--441--8251Chr08:3169393..3169417 (25 bp)
GGCACTGGCACGTGCTGAGTCTGCT
LOC_Os08g05900
OsAffx.29056.1.S1_at--752--1951Chr08:3169390..3169414 (25 bp)
ACTGGCACGTGCTGAGTCTGCTGCT
LOC_Os08g05900
OsAffx.29056.1.S1_at--396--8511Chr08:3169388..3169412 (25 bp)
TGGCACGTGCTGAGTCTGCTGCTAG
LOC_Os08g05900
OsAffx.29056.1.S1_at--432--1911Chr08:3169384..3169408 (25 bp)
ACGTGCTGAGTCTGCTGCTAGGGTT
LOC_Os08g05900
OsAffx.29056.1.S1_at--844--9111Chr08:3169384..3169405 (22 bp)
TGCTGAGTCTGCTGCTAGGGTTTTA
LOC_Os08g05900
OsAffx.29056.1.S1_at--1057--3851Chr08:3169205..3169403 (25 bp)
CTGAGTCTGCTGCTAGGGTTTTACC
LOC_Os08g05900
OsAffx.29056.1.S1_at--980--6091Chr08:3169203..3169401 (25 bp)
GAGTCTGCTGCTAGGGTTTTACCCT
LOC_Os08g05900
Target Sequence 
AAGATGACAGGAGTTGGCAGCGGCGGGAAGGAGAGTGGCTCGTCGCCGCCGTCGCCGTCGTCGACGTCGACGTCGACGGT
GATAGCCACGGCGTCGGAGGGGGAGAGGCCTGCGGCGGCGGCGGCGGCTACGACGTCTCCGGCTGTGTGGCACTGGCACG
TGCTGAGTCTGCTGCTAGGGTTTTACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis