Browse Element(s) Details


OsAffx.17522.1.S1_at

Description tigr:9636.m04640
TID=OsAffx.17522.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oxysterol-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0587011/11Oxysterol-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05890Os.18138.1.S1_at10/118+3165261..3169089MSP domain containing protein, expressed
LOC_Os08g05900OsAffx.29056.1.S1_at11/118+3169173..3169640hypothetical protein
LOC_Os08g05910Os.7458.1.S1_a_at11/118+3175990..3184094Nitrate/chlorate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008202biological_processsteroid metabolism
GO:0008142molecular_functionoxysterol binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17522.1.S1_at--1054--5411Chr08:3158319..3158343 (25 bp)
GAAGCCGAGATGGTTCCAGAAGGAT
LOC_Os08g05870
OsAffx.17522.1.S1_at--1144--1391Chr08:3158349..3158373 (25 bp)
AGACGGGACATATCGCTTCAAAGGC
LOC_Os08g05870
OsAffx.17522.1.S1_at--408--5611Chr08:3158399..3158423 (25 bp)
GACAATGGGATGACTGCCTTGACAT
LOC_Os08g05870
OsAffx.17522.1.S1_at--1054--5251Chr08:3158450..3158474 (25 bp)
GAATGCTCAGGTTCAGTTGCTTTTA
LOC_Os08g05870
OsAffx.17522.1.S1_at--913--6951Chr08:3158475..3158499 (25 bp)
GTAGCATTAGACCAACTCCAAGTTC
LOC_Os08g05870
OsAffx.17522.1.S1_at--589--8171Chr08:3158504..3158528 (25 bp)
GGAACTCTGAAGCATTTGCAGGTTT
LOC_Os08g05870
OsAffx.17522.1.S1_at--367--5932Chr08:3158599..3158623 (25 bp)
GAGCATTGCCATCTTCAGTGGTAGA
LOC_Os08g05870
OsAffx.17522.1.S1_at--533--851Chr08:3158633..3158657 (25 bp)
ATGGCGTTGGTTACCGGGCTGTTAT
LOC_Os08g05870
OsAffx.17522.1.S1_at--1105--7571Chr08:3158648..3158672 (25 bp)
GGGCTGTTATTAGCTCATTTCCTGA
LOC_Os08g05870
OsAffx.17522.1.S1_at--1156--9552Chr08:3158699..3158723 (25 bp)
TCTTTTGTTCGTTGCCTTGGATCCA
LOC_Os08g05870
OsAffx.17522.1.S1_at--544--6691Chr08:3158709..3158733 (25 bp)
GTTGCCTTGGATCCATGTTGGGATT
LOC_Os08g05870
Target Sequence 
GAAGCCGAGATGGTTCCAGAAGGATGGCGAAGACGGGACATATCGCTTCAAAGGCGGTTACTGGGAAGCAAGGGAGCATG
GACAATGGGATGACTGCCTTGACATATTTGGGGAGTTTTCAGAGACATGATGAATGCTCAGGTTCAGTTGCTTTTAGTAG
CATTAGACCAACTCCAAGTTCAGTTGGAACTCTGAAGCATTTGCAGGTTTTTCTGCATAGAAACAAGGACAGCAATGCAA
ATGCAATGCAATGCAATATGAGGAAGGAATAGACAATAGAGAGCATTGCCATCTTCAGTGGTAGATATGCATGGATGGCG
TTGGTTACCGGGCTGTTATTAGCTCATTTCCTGAACAATTATTCGTAATAATGTTGCTCTTCTTTTGTTCGTTGCCTTGG
ATCCATGTTGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis