Browse Element(s) Details


OsAffx.29094.1.S1_at

Description tigr:9636.m00747
TID=OsAffx.29094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0802011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08000OsAffx.5745.1.S1_x_at11/118+4517322..4525712expressed protein
LOC_Os08g08000Os.9252.1.S1_at10/118+4517322..4525712expressed protein
LOC_Os08g08000Os.51691.1.S2_at10/118+4517322..4525712expressed protein
LOC_Os08g08020OsAffx.29094.1.S1_at11/118+4540627..4543036expressed protein
LOC_Os08g08030OsAffx.29095.1.S1_at11/118+4545166..4551186Double-strand break repair protein MRE11, putative, expressed
LOC_Os08g08040Os.12091.1.S1_at10/118+4556085..4559028U6 snRNA-associated Sm-like protein LSm7, putative, expressed
LOC_Os08g08050Os.47992.1.S1_at1/118+4560471..4563589retrotransposon protein, putative, unclassified
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29094.1.S1_at--405--6071Chr08:4542439..4542463 (25 bp)
GAGTTCTAAGAATACCACAACAGCA
LOC_Os08g08020
OsAffx.29094.1.S1_at--89--1191Chr08:4542467..4542491 (25 bp)
AGTAGACACCCAAAAGACACATCTT
LOC_Os08g08020
OsAffx.29094.1.S1_at--410--1491Chr08:4542501..4542525 (25 bp)
AGCAAGTGAAATCTGCAACTAGCAA
LOC_Os08g08020
OsAffx.29094.1.S1_at--319--5351Chr08:4542604..4542628 (25 bp)
GAAGATCGAATTTCCTCGGCGGAAC
LOC_Os08g08020
OsAffx.29094.1.S1_at--961--211Chr08:4542678..4542702 (25 bp)
ATAGGATAGAACACCCAGGGAACTC
LOC_Os08g08020
OsAffx.29094.1.S1_at--878--1071Chr08:4542694..4542718 (25 bp)
AGGGAACTCCCTAGACCAGGACAGT
LOC_Os08g08020
OsAffx.29094.1.S1_at--454--5651Chr08:4542713..4542737 (25 bp)
GACAGTGATCGCGTCAGGTACAATA
LOC_Os08g08020
OsAffx.29094.1.S1_at--606--3571Chr08:4542824..4542848 (25 bp)
CATAGCTTAGGTGATGCCAATAAAA
LOC_Os08g08020
OsAffx.29094.1.S1_at--608--2751Chr08:4542870..4542894 (25 bp)
AAGACATGGCTGGTGGTACTGCTGC
LOC_Os08g08020
OsAffx.29094.1.S1_at--358--7511Chr08:4542882..4542906 (25 bp)
GTGGTACTGCTGCTGTGAAGCCCAA
LOC_Os08g08020
OsAffx.29094.1.S1_at--622--4731Chr08:4542893..4542917 (25 bp)
GCTGTGAAGCCCAATATGTCTGTAA
LOC_Os08g08020
Target Sequence 
GAGTTCTAAGAATACCACAACAGCAGAAAGTAGACACCCAAAAGACACATCTTTAGAAGAAAAGCAAGTGAAATCTGCAA
CTAGCAAGGAAGAAGATGGCTTACAAGACAAAACAGATGATGCCATTGAAGATATTGATGATATCTACGGGGAAAGTCAT
TCAAAGAAGATCGAATTTCCTCGGCGGAACAAAAAGTTTTTGACTAACAGTGGAGTAGACAGCCAAGATGAAGAACTGCA
TAGGATAGAACACCCAGGGAACTCCCTAGACCAGGACAGTGATCGCGTCAGGTACAATAAACTGTTGGAGAAGGAAATTG
ATAAAGTTTCTGGTGAAACCAAGAATAAAAAGAGTATTGATGGTAGTTTGGAAAAGATATCCAAGCATAGCTTAGGTGAT
GCCAATAAAAACGGATTGAAACAAACTGTGGAAGACATGGCTGGTGGTACTGCTGCTGTGAAGCCCAATATGTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis