Browse Element(s) Details


OsAffx.29107.1.S1_x_at

Description tigr:9636.m00828
TID=OsAffx.29107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0875011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08710OsAffx.16899.1.S1_at10/118+5040389..5042264hypothetical protein
LOC_Os08g08720OsAffx.29169.1.S1_at8/118+5045569..5047893retrotransposon protein, putative, unclassified
LOC_Os08g08720OsAffx.29169.3.S1_at4/118+5045569..5047893retrotransposon protein, putative, unclassified
LOC_Os08g08730NANA8+5052608..5052937hypothetical protein
LOC_Os08g08740OsAffx.16900.1.S1_at11/118+5062292..5063296hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_x_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08750OsAffx.29107.1.S1_at11/118+5066760..5067179hypothetical protein
LOC_Os08g08760OsAffx.5755.1.S1_at11/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08760Os.57479.1.S1_x_at1/118+5073138..5075754Ubiquitin family protein
LOC_Os08g08770NANA8+5077283..5083369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08780OsAffx.21897.5.S1_x_at4/118+5083681..5086621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08790OsAffx.16901.1.S1_at11/118+5088060..5089137Ubiquitin family protein
LOC_Os08g08800OsAffx.29108.1.S1_at11/118+5090474..5093058hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29107.1.S1_x_at--152--8551Chr08:5067124..5067148 (25 bp)
TGGAGCTATGGGACGACGACATGCC
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--739--9611Chr08:5067079..5067103 (25 bp)
TCATCTGGCGCCTAGGGATGGCCAG
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--456--9032Chr08:5066935..5066959 (25 bp)
TGCACGGCGTCGCAATGGTGCTCCT
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--954--1932Chr08:5066932..5066956 (25 bp)
ACGGCGTCGCAATGGTGCTCCTCAG
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--699--7211Chr08:5066927..5066951 (25 bp)
GTCGCAATGGTGCTCCTCAGCGTCT
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--156--3211Chr08:5066923..5066947 (25 bp)
CAATGGTGCTCCTCAGCGTCTGCGG
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--489--8611Chr08:5066920..5066944 (25 bp)
TGGTGCTCCTCAGCGTCTGCGGCGT
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--404--8391Chr08:5066886..5066910 (25 bp)
GGCGCGAGGCCCAGGTGATGGTGCT
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--484--891Chr08:5066880..5066904 (25 bp)
AGGCCCAGGTGATGGTGCTCGCCGG
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--752--6691Chr08:5066808..5066832 (25 bp)
GTTCCTGCTGCTTGTGCTGGCCGGA
LOC_Os08g08750
OsAffx.29107.1.S1_x_at--61--9131Chr08:5066794..5066818 (25 bp)
TGCTGGCCGGACTCCTCCAGGGAGA
LOC_Os08g08750
Target Sequence 
TGGAGCTATGGGACGACGACATGCCGGCCGGCATGCTCCGGCGCGTCATCTGGCGCCTAGGGATGGCCAGCGCCGCCGTC
GCCGTCGCAGCACTCGAGGGCGCCCAAGGCCGCCGCCGCCGCCGCGCCGGCAGCAGCGGCGCAGGAGGGGCCGTCCTACT
GCCGGCGCTCGCGTCGTTCGTGCTGCTGCTGCACGGCGTCGCAATGGTGCTCCTCAGCGTCTGCGGCGTGCGGGCGGCGG
CGCGAGGCCCAGGTGATGGTGCTCGCCGGCGCCGCTGCCGCCTCGCGCGCGCCGTCGCCCGGGCGTCGCTGACGCCGTTC
CTGCTGCTTGTGCTGGCCGGACTCCTCCAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29107.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis