Browse Element(s) Details


OsAffx.29131.1.S1_at

Description tigr:9636.m00985
TID=OsAffx.29131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1024010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10210OsAffx.16933.1.S1_at10/118+5915434..5916765hypothetical protein
LOC_Os08g10220NANA8+5924367..5926105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.14491.2.S1_x_at7/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.47463.1.S1_x_at4/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10240OsAffx.29131.1.S1_at10/118+5933187..5934569hypothetical protein
LOC_Os08g10240Os.50819.1.S1_at1/118+5933187..5934569hypothetical protein
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10260Os.53089.1.S1_at10/118+5958066..5961799NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29131.1.S1_at--916--1771NONE
ACCGGCGGCGGAATATTTGAGCCTC
NONE
OsAffx.29131.1.S1_at--42--4711Chr08:5933574..5934037 (25 bp)
GCGGCGGAATATTTGAGCCTCCATC
LOC_Os08g10240
OsAffx.29131.1.S1_at--409--5231Chr08:5933568..5933592 (25 bp)
GAATATTTGAGCCTCCATCGTCGTC
LOC_Os08g10240
OsAffx.29131.1.S1_at--880--231Chr08:5933566..5933590 (25 bp)
ATATTTGAGCCTCCATCGTCGTCCA
LOC_Os08g10240
OsAffx.29131.1.S1_at--113--2991Chr08:5933496..5933520 (25 bp)
AATGTGCTTCCACCGCCTGCCGTTG
LOC_Os08g10240
OsAffx.29131.1.S1_at--1115--9171Chr08:5933479..5933503 (25 bp)
TGCCGTTGTCCACATCTATCACTAT
LOC_Os08g10240
OsAffx.29131.1.S1_at--635--6631Chr08:5933475..5933499 (25 bp)
GTTGTCCACATCTATCACTATGCCC
LOC_Os08g10240
OsAffx.29131.1.S1_at--361--2091Chr08:5933468..5933492 (25 bp)
ACATCTATCACTATGCCCTCAACGA
LOC_Os08g10240
OsAffx.29131.1.S1_at--140--611Chr08:5933456..5933480 (25 bp)
ATGCCCTCAACGACATCCATTCAAT
LOC_Os08g10240
OsAffx.29131.1.S1_at--762--9691Chr08:5933450..5933474 (25 bp)
TCAACGACATCCATTCAATCCAAGG
LOC_Os08g10240
OsAffx.29131.1.S1_at--859--10491Chr08:5933437..5933461 (25 bp)
TTCAATCCAAGGAGATCACCCTCTG
LOC_Os08g10240
Target Sequence 
ACCGGCGGCGGAATATTTGAGCCTCCATCGTCGTCCACGGCCACTGCTCAACCACCAGTCGCCACCGCCGCCATCCACTT
CCAATGTGCTTCCACCGCCTGCCGTTGTCCACATCTATCACTATGCCCTCAACGACATCCATTCAATCCAAGGAGATCAC
CCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis