Browse Element(s) Details


OsAffx.29133.1.S1_x_at

Description tigr:9636.m00993
TID=OsAffx.29133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1033011/11SHR5-receptor-like kinase, putative, expressed
LOC_Os05g167401/11SHR5-receptor-like kinase, putative, expressed
LOC_Os05g166701/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10310Os.27804.1.S1_at11/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10310Os.52580.2.S1_x_at1/118+6009401..6016934SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.14862.1.S1_s_at11/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.14862.1.S1_a_at8/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.52580.2.S1_at1/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10320Os.52580.2.S1_x_at1/118+6025881..6032797SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.2.S1_x_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330OsAffx.29133.1.S1_x_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.2.S1_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10330Os.52580.1.S1_at11/118+6034186..6042219SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10340Os.37607.1.A1_at11/118+6049485..6052651F-box domain containing protein, expressed
LOC_Os08g10350Os.14108.1.S1_at10/118+6056430..6059012integral membrane family protein, putative, expressed
LOC_Os08g10360NANA8+6065206..6072519retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29133.1.S1_x_at--723--10471Chr08:6041362..6041386 (25 bp)
TTAACACAAAAGTTGCCGGCACGTT
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--911--6851Chr08:6041469..6041490 (22 bp)
GTTTGGCTACCTGGCACCTGAGTAT
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--920--731Chr08:6041522..6041546 (25 bp)
ATGTTTTCTCATTTGGTGTGGTCGC
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--119--10031Chr08:6041549..6041573 (25 bp)
TAGAGACTGTCGCTGGTCGATCAAA
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--602--1791Chr08:6041575..6041599 (25 bp)
ACCGACTACTCCCTTGTGGAAGACA
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--1109--2651Chr08:6041750..6041774 (25 bp)
AAGCGCTCGGAATCGTGGACCCAAG
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--985--6011Chr08:6041805..6041829 (25 bp)
GAGAGTCATTCGTATGTCGTTCCTT
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--91--7533Chr08:6041875..6041899 (25 bp)
GTGGCAATGCTCACCGGAGACATTC
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--314--7731Chr08:6041913..6041937 (25 bp)
GGTGGCGAAGCCGAACTACATCATT
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--908--931Chr08:6041956..6041980 (25 bp)
AGGAATAGCAGCCATGTCACCACCG
LOC_Os08g10330
OsAffx.29133.1.S1_x_at--1013--7691Chr08:6041989..6042013 (25 bp)
GGGTCTACTGCCGATGAGCTCAGTG
LOC_Os08g10330
Target Sequence 
TTAACACAAAAGTTGCCGGCACGTTTGGCTACCTGGCACCTGAGTATGCAATGAGAGGCCATTTAACTGAAAAGGTTGAT
GTTTTCTCATTTGGTGTGGTCGCTCTAGAGACTGTCGCTGGTCGATCAAACACCGACTACTCCCTTGTGGAAGACAAGAA
ATATCTCTTTGAATGGGCTTGGGGGCTCTATGAACGAGAGCAAGCGCTCGGAATCGTGGACCCAAGGCTCGAGGAAATCA
ATGAAGAGGAGGTCTTGAGAGTCATTCGTATGTCGTTCCTTTGCACCCAAGGCTCACCACACCAAAGACCACCTATGTCA
AGGGTGGTGGCAATGCTCACCGGAGACATTCCGGTGAGTGATGTGGTGGCGAAGCCGAACTACATCATTGAGTTGCAGCT
CAGGGGAAGGAATAGCAGCCATGTCACCACCGGCTACTCCGGGTCTACTGCCGATGAGCTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29133.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis