Browse Element(s) Details


OsAffx.29146.3.S1_s_at

Description tigr:9636.m01085
TID=OsAffx.29146.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1188011/11hypothetical protein
LOC_Os08g1113011/11hypothetical protein
LOC_Os12g098201/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11840OsAffx.29146.4.S1_s_at11/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_at4/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_x_at3/118+6936014..6936745hypothetical protein
LOC_Os08g11850OsAffx.22947.1.S1_x_at1/118+6942984..6947429retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11860OsAffx.31869.5.S1_x_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.1.S1_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.4.S1_x_at1/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11870NANA8+6954896..6956176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11880OsAffx.29146.3.S1_s_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.1.S1_x_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.2.S1_x_at1/118+6959038..6960790hypothetical protein
LOC_Os08g11890OsAffx.29160.1.S1_at11/118+6961399..6963349hypothetical protein
LOC_Os08g11900NANA8+6968642..6970094retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.10731.2.A1_at3/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.46314.2.S1_x_at2/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.47114.1.S1_x_at2/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910OsAffx.32036.1.S1_at1/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11920NANA8+6978773..6984320retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29146.3.S1_s_at--519--8112Chr08:6540187..6540211 (25 bp)
GGACGATGGTGCTCGCCGTGTTCTC
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--854--812Chr08:6540192..6540216 (25 bp)
ATGGTGCTCGCCGTGTTCTCCGAGG
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--1108--4112Chr08:6540211..6540235 (25 bp)
CCGAGGCGGGCCTTCAGTTTCCGTG
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--1007--4412Chr08:6540315..6540339 (25 bp)
GCCATCTTCGACAGGGCTTGTCGGA
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--901--10592Chr08:6540321..6540345 (25 bp)
TTCGACAGGGCTTGTCGGACCGCCG
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--830--1552Chr08:6540364..6540388 (25 bp)
AGCTTTTCGGCGTCGTATTTTATGC
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--161--4652Chr08:6540373..6540397 (25 bp)
GCGTCGTATTTTATGCCACCGTAAA
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--940--6813Chr08:6540378..6540402 (25 bp)
GTATTTTATGCCACCGTAAATTCGA
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--442--7032Chr08:6540393..6540417 (25 bp)
GTAAATTCGAAGATGGTGGTCACTC
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--273--7772Chr08:6540568..6540592 (25 bp)
GGTCCGACGCGGTGAAAGCCCTTCG
LOC_Os08g11130
OsAffx.29146.3.S1_s_at--1045--5772Chr08:6540573..6540597 (25 bp)
GACGCGGTGAAAGCCCTTCGATGGC
LOC_Os08g11130
Target Sequence 
GGACGATGGTGCTCGCCGTGTTCTCCGAGGCGGGCCTTCAGTTTCCGTGCAACATGTTGTTGCCGGAGATCCTTCGCCTT
TTTCAGGTGGAGCTCCCCCAACTGAGCCCATCGGCTCTCGTCCGGATCGCCATCTTCGACAGGGCTTGTCGGACCGCCGG
GTTTGAGCGGAGCGCCGAGCTTTTCGGCGTCGTATTTTATGCCACCGTAAATTCGAAGATGGTGGTCACTCCGGCCGGGA
CAAAGAAGACGGTGTTCGTGAGCGTGAACTTTAATGTTCGCCCCGGGCGCTCTGATCTCTGGCCGGTGAACGCCGCTATG
TCGAAGTGGGATCGCCATTGGATGTCGAAGTGGTTCTACCACGCCATCCCCTTCGAGGTTGGGTCCGACGCGGTGAAAGC
CCTTCGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29146.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis