Browse Element(s) Details


OsAffx.29152.1.S1_s_at

Description tigr:9636.m01124
TID=OsAffx.29152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1145011/11expressed protein
LOC_Os03g606201/11Heat shock cognate 70 kDa protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11400NANA8+6688027..6688434hypothetical protein
LOC_Os08g11410OsAffx.10632.1.S1_at2/118+6689050..6689917retrotransposon protein, putative, unclassified
LOC_Os08g11420Os.45173.1.S1_x_at1/118+6691120..6693549retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g11430NANA8+6693835..6698016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11440NANA8+6701079..6702387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11450OsAffx.29152.1.S1_s_at11/118+6713204..6713889expressed protein
LOC_Os08g11459NANA8+6719253..6719424NA
LOC_Os08g11470Os.53418.1.S1_at11/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11470OsAffx.18618.1.S1_at1/118+6722113..6726423transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g11480Os.50425.1.S1_at10/118+6729401..6733397expressed protein
LOC_Os08g11480Os.27064.1.S2_at3/118+6729401..6733397expressed protein
LOC_Os08g11490OsAffx.29153.1.S1_at11/118+6736141..6736536hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29152.1.S1_s_at--1155--6171Chr08:6713536..6713560 (25 bp)
GAGGAGCACCGACGATAGATAATAG
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--564--8071Chr08:6713538..6713562 (25 bp)
GGAGCACCGACGATAGATAATAGTG
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--916--10552Chr08:6713592..6713616 (25 bp)
TTCTTGTTTGCCTGTGATGTTCTTA
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--379--9591Chr08:6713593..6713617 (25 bp)
TCTTGTTTGCCTGTGATGTTCTTAC
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--1153--3611Chr08:6713594..6713618 (25 bp)
CTTGTTTGCCTGTGATGTTCTTACT
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--237--10811Chr08:6713595..6713619 (25 bp)
TTGTTTGCCTGTGATGTTCTTACTT
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--635--8771Chr08:6713596..6713620 (25 bp)
TGTTTGCCTGTGATGTTCTTACTTT
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--1142--9551Chr08:6713612..6713636 (25 bp)
TCTTACTTTGTCCTGAATTTGTTTA
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--687--9891Chr08:6713615..6713639 (25 bp)
TACTTTGTCCTGAATTTGTTTACAT
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--906--7251Chr08:6713621..6713645 (25 bp)
GTCCTGAATTTGTTTACATATGCTG
LOC_Os08g11450
OsAffx.29152.1.S1_s_at--369--5231Chr08:6713626..6713650 (25 bp)
GAATTTGTTTACATATGCTGTGTGA
LOC_Os08g11450
Target Sequence 
GAGGAGCACCGACGATAGATAATAGTGGCAGTAGCAACTCGATGGTGGCGTCCAAATTCTTGTTTGCCTGTGATGTTCTT
ACTTTGTCCTGAATTTGTTTACATATGCTGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29152.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis