Browse Element(s) Details


OsAffx.29160.1.S1_at

Description tigr:9636.m01158
TID=OsAffx.29160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1189011/11hypothetical protein
LOC_Os08g1112010/11retrotransposon protein, putative, unclassified
LOC_Os02g252601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11840OsAffx.29146.4.S1_s_at11/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_at4/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_x_at3/118+6936014..6936745hypothetical protein
LOC_Os08g11850OsAffx.22947.1.S1_x_at1/118+6942984..6947429retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11860OsAffx.31869.5.S1_x_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.1.S1_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.4.S1_x_at1/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11870NANA8+6954896..6956176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11880OsAffx.29146.3.S1_s_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.1.S1_x_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.2.S1_x_at1/118+6959038..6960790hypothetical protein
LOC_Os08g11890OsAffx.29160.1.S1_at11/118+6961399..6963349hypothetical protein
LOC_Os08g11900NANA8+6968642..6970094retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.10731.2.A1_at3/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.46314.2.S1_x_at2/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.47114.1.S1_x_at2/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910OsAffx.32036.1.S1_at1/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11920NANA8+6978773..6984320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11930NANA8+6986078..6992749retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29160.1.S1_at--304--9772Chr08:6962635..6962659 (25 bp)
TAAGGGACCTGTTTTCCTGCCAGAA
LOC_Os08g11890
OsAffx.29160.1.S1_at--355--6132Chr08:6962661..6962685 (25 bp)
GAGGGTTTCCTCCATACAGAAATCT
LOC_Os08g11890
OsAffx.29160.1.S1_at--1015--10792Chr08:6962706..6962730 (25 bp)
TTGTTTCTAATGTACCTCCGGGACA
LOC_Os08g11890
OsAffx.29160.1.S1_at--680--2772Chr08:6962755..6962779 (25 bp)
AAGACCAGGTGCAACGACGTCAGCA
LOC_Os08g11890
OsAffx.29160.1.S1_at--945--1072Chr08:6962810..6962834 (25 bp)
AGGGAACAACCTCAGCATGCTGGAC
LOC_Os08g11890
OsAffx.29160.1.S1_at--992--652Chr08:6962840..6962864 (25 bp)
ATGAATCGGCTATCTCAGCACAGAA
LOC_Os08g11890
OsAffx.29160.1.S1_at--648--9132Chr08:6962866..6962890 (25 bp)
TGCGGCAATGTTTAGGTCACCTCAA
LOC_Os08g11890
OsAffx.29160.1.S1_at--384--10733Chr08:6962898..6962922 (25 bp)
TTGAGCCGATTCAGCCAACACAAAC
LOC_Os08g11890
OsAffx.29160.1.S1_at--173--2971Chr08:6962974..6962998 (25 bp)
AATGGAGCCGAGAACACCTATCAAT
LOC_Os08g11890
OsAffx.29160.1.S1_at--285--3552Chr08:6963005..6963029 (25 bp)
CATCAACCCGTTGGAGCTCAATTTA
LOC_Os08g11890
OsAffx.29160.1.S1_at--298--3412Chr08:6963176..6963197 (22 bp)
CAGCAGTTTAATCCTACTCAGCAGC
LOC_Os08g11890
Target Sequence 
TAAGGGACCTGTTTTCCTGCCAGAAGGAGGGTTTCCTCCATACAGAAATCTAGTGATCGGCAATCAACAGGTTGTTTCTA
ATGTACCTCCGGGACAGCCAATGGCGTCGGCTTCAGCTTCAAGACCAGGTGCAACGACGTCAGCACAAAGACCGGTTAAT
CCTTACTTATTGACCAGGGAACAACCTCAGCATGCTGGACAAAACATGAATCGGCTATCTCAGCACAGAATTGCGGCAAT
GTTTAGGTCACCTCAACCGGCTGTTGAGCCGATTCAGCCAACACAAACTAGGCAGCAAGTTGTGCAGCCGATTGGACAAC
AAGTCATTCAACCAGTACCAATGGAGCCGAGAACACCTATCAATCGACAACATCAACCCGTTGGAGCTCAATTTATTCCT
AAGCAGCAGTTTAATCCTACTCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis